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Sequence Set Browser

 

ACJH00000000.1 Volvox carteri f. nagariensis

Master
# of Contigs: 11,352
# of Proteins: 14,436
# of Scaffolds/Chrs: 1,251
Total length: 125,467,762 bp
BioProject: PRJNA13109
BioSample: SAMN02953753
Keywords: WGS
Annotation: Scaffolds
Organism: Volvox carteri f. nagariensisshow lineagehide lineage
Biosource:
/forma = nagariensis
/mol_type = genomic
/strain = Eve
WGS: ACJH01000001:ACJH01011352
Scaffolds: GL378323:GL379573
1,251 scaffolds, 14,436 proteins, total length is 137,684,403 bases
Reference:
Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri : Science 329 (5988), 223-226 (2010) – show 28 authorshide authors
Prochnik,S.E., Umen,J., Nedelcu,A.M., Hallmann,A., Miller,S.M., Nishii,I., Ferris,P., Kuo,A., Mitros,T., Fritz-Laylin,L.K., Hellsten,U., Chapman,J., Simakov,O., Rensing,S.A., Terry,A., Pangilinan,J., Kapitonov,V., Jurka,J., Salamov,A., Shapiro,H., Schmutz,J., Grimwood,J., Lindquist,E., Lucas,S., Grigoriev,I.V., Schmitt,R., Kirk,D., Rokhsar,D.S.
Submission:
Submitted (02-JUL-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA – show 30 authorshide authors
Kuo,A., Prochnik,S.E., Terry,A., Salamov,A., Pangilinan,J., Shapiro,H., Schmutz,J., Grimwood,J., Lindquist,E., Pitluck,S., Lucas,S., Umen,J., Nedelcu,A., Hallmann,A., Miller,S., Nishii,I., Ferris,P., Mitros,T., Fritz-Laylin,L.K., Hellsten,U., Chapman,J., Simakov,O., Rensing,S.A., Kapitonov,V., Jurka,J., Schmitt,R., Kirk,D., Rokhsar,D.S., Grigoriev,I.V., US DOE Joint Genome Institute (JGI-PGF)

The Volvox carteri f. nagariensis whole genome shotgun (WGS) project has the project accession ACJH00000000. This version of the project (01) has the accession number ACJH01000000, and consists of sequences ACJH01000001-ACJH01011352.

URL -- http://www.jgi.doe.gov/Volvox JGI Project ID: 3436681 The DNA was provided by Stephen Miller (stmiller@umbc.edu)and David Kirk (kirk@biology2.wustl.edu) Contacts: Simon E. Prochnik (prochnik@gmail.com) Daniel S. Rokhsar (dsrokhsar@gmail.com) James Umen (umen@salk.edu) Igor Grigoriev (ivgrigoriev@lbl.gov) Assembly and annotation done by JGI.

##Genome-Assembly-Data-START##
Assembly Method : JAZZ
Assembly Name : v1.0
Genome Coverage : 8x
Sequencing Technology : Sanger
##Genome-Assembly-Data-END##
##Metadata-START##
Organism Display Name : Volvox carteri f. nagariensis Eve
GOLD Stamp ID : Gi00776
Cell Shape : Sphere-shaped
Diseases : None
Phenotypes : Multicellular
##Metadata-END##
Contigs
Download
GenBank:ACJH01.1.gbff.gz 53.8 Mb
FASTA:ACJH01.1.fsa_nt.gz 36.3 Mb
ASN.1:ACJH01.1.bbs.gz 29.9 Mb