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Sequence Set Browser


ACIW00000000.1 Alternaria brassicicola ATCC 96836

# of Contigs: 3,280
# of Proteins: 0
Total length: 29,536,471 bp
BioProject: PRJNA34523
BioSample: SAMN02953751
Keywords: WGS
Annotation: Contigs
Organism: Alternaria brassicicola ATCC 96836show lineagehide lineage
/culture_collection = ATCC:96836
/mol_type = genomic
/strain = ATCC 96836
WGS: ACIW01000001:ACIW01003280
Draft sequence assembly of the Alternaria brassicicola genome : Unpublished – show 6 authorshide authors
Clifton,S., Fulton,L., Fulton,B., Godfrey,J., Minx,P., Nelson,J.
Submitted (16-FEB-2009) Virginia Bioinformatics Institute, Bioinformatics Facility I (0477), Blacksburg, VA 24061, USA – Lawrence,C., Tyler,B.

The Alternaria brassicicola ATCC 96836 whole genome shotgun (WGS) project has the project accession ACIW00000000. This version of the project (01) has the accession number ACIW01000000, and consists of sequences ACIW01000001-ACIW01003280.

The Alternaria brassicicola isolate selected for sequencing, A. brassicicola ATCC 96836, is available from the American Type Culture Collection (Manassas, VA). This was originally isolated from infected Brassica oleracea (cabbage) seed by E.G. Simmons, designated as EGS 42-002, and deposited at ATCC. The genome was sequenced to a total of 6.4x whole genome coverage. A combination of whole genome shotgun plasmid, fosmid and BAC end sequences were used. The combined sequence reads were assembled using the PCAP software (GenomeRes. 13(9):2164-70 2003). This project is being funded by USDA-CSREES as part of the NSF-USDA Interagency Microbial Genome Sequencing Program.

GenBank:ACIW01.1.gbff.gz 12.6 Mb
FASTA:ACIW01.1.fsa_nt.gz 8.8 Mb
ASN.1:ACIW01.1.bbs.gz 12 Mb