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Sequence Set Browser

 

ACIP00000000.2 Shuttleworthia satelles DSM 14600

Master
# of Contigs: 10
# of Proteins: 2,261
# of Scaffolds/Chrs: 5
Total length: 2,168,977 bp
BioProject: PRJNA33169
BioSample: SAMN00008860
Keywords: WGS
Annotation: Contigs
Organism: Shuttleworthia satelles DSM 14600show lineagehide lineage
Biosource:
/culture_collection = DSM:14600
/mol_type = genomic
/strain = DSM 14600
WGS: ACIP02000001:ACIP02000010
Scaffolds: GG665866:GG665870
5 scaffolds, total length is 2,169,477 bases
Submission:
Submitted (11-MAR-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (28-APR-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.

On Apr 24, 2009 this sequence version replaced gi:225166727.

The Shuttleworthia satelles DSM 14600 whole genome shotgun (WGS) project has the project accession ACIP00000000. This version of the project (02) has the accession number ACIP02000000, and consists of sequences ACIP02000001-ACIP02000010.

Shuttleworthia satelles (There is no 16S rDNA gene available at this time) is a member of the Firmicutes division of the domain bacteria and has been isolated from the oral cavity. The sequenced strain was obtained from Floyd E. Dewhirst and Jacques Izard who acquired the sample from the Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 14600). We have performed one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. This work was supported by the National Human Genome Research Institute and the NIH Roadmap Human Microbiome Project [http://nihroadmap.nih.gov/hmp/]. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Genome Coverage: 35X Sequencing Technology: 454 Annotation was added to the contigs in May 2009.

Product names were updated in June 2013.

Contigs
Proteins
Download
GenBank:ACIP02.1.gbff.gz 1.5 Mb
FASTA:ACIP02.1.fsa_nt.gz 651.5 kb
ASN.1:ACIP02.1.bbs.gz 1.2 Mb