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Sequence Set Browser

 

ACIO00000000.1 Hungatella hathewayi DSM 13479

Master
# of Contigs: 1,294
# of Proteins: 7,572
# of Scaffolds/Chrs: 714
Total length: 6,626,224 bp
BioProject: PRJNA30755
BioSample: SAMN00008805
Keywords: WGS
Annotation: Contigs
Organism: Hungatella hathewayi DSM 13479show lineagehide lineage
Biosource:
/culture_collection = DSM:13479
/mol_type = genomic
/strain = DSM 13479
WGS: ACIO01000001:ACIO01001294
Scaffolds: GG667607:GG668320
714 scaffolds, total length is 7,163,884 bases
Submission:
Submitted (28-APR-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (21-JAN-2010) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.

The Hungatella hathewayi DSM 13479 whole genome shotgun (WGS) project has the project accession ACIO00000000. This version of the project (01) has the accession number ACIO01000000, and consists of sequences ACIO01000001-ACIO01001294.

Clostridium hathewayi (GenBank Accession Number for 16S rDNA gene: AJ311620) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Jeffrey Gordon who acquired the sample from the Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 13479). Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This work was supported by the National Human Genome Research Institute and the NIH Roadmap Human Microbiome Project [http://nihroadmap.nih.gov/hmp/] This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Genome Coverage: 14.2x Sequencing Technology: 454 Annotation was added to the contigs in February 2010.

Product names were updated in June 2013.

Contigs
Proteins
Download
GenBank:ACIO01.1.gbff.gz 5.3 Mb
FASTA:ACIO01.1.fsa_nt.gz 2 Mb
ASN.1:ACIO01.1.bbs.gz 4.2 Mb