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Sequence Set Browser

 

ACIM00000000.2 Dialister invisus DSM 15470

Master
# of Contigs: 2
# of Proteins: 1,954
# of Scaffolds: 1
Total length: 1,895,860 bp
BioProject: PRJNA33143
BioSample: SAMN00008820
Keywords: WGS
Annotation: Contigs
Organism: Dialister invisus DSM 15470show lineagehide lineage
Biosource:
/culture_collection = DSM:15470
/mol_type = genomic
/strain = DSM 15470
WGS: ACIM02000001:ACIM02000002
Scaffolds: GG698602:GG698602
1 scaffold, total length is 1,895,960 bases
Submission:
Submitted (11-MAR-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (15-JUL-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (09-SEP-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.

On Aug 11, 2009 this sequence version replaced gi:225166988.

The Dialister invisus DSM 15470 whole genome shotgun (WGS) project has the project accession ACIM00000000. This version of the project (02) has the accession number ACIM02000000, and consists of sequences ACIM02000001-ACIM02000002.

Dialister invisus (GenBank Accession Number for 16S rDNA gene: AY162469) is a member of the Firmicutes division of the domain bacteria and has been isolated from an infected dental root canal. The sequenced strain was obtained from Floyd E. Dewhirst and Jacques Izard the Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 15470). We have performed one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This work was supported by the National Human Genome Research Institute and the NIH Roadmap Human Microbiome Project [http://nihroadmap.nih.gov/hmp/]. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Genome Coverage: 38.3x Sequencing Technology: 454 Annotation was added to the contigs in September 2009.

Product names were updated in June 2013.

Contigs
Proteins
Download
GenBank:ACIM02.1.gbff.gz 1.3 Mb
FASTA:ACIM02.1.fsa_nt.gz 568.6 kb
ASN.1:ACIM02.1.bbs.gz 1 Mb