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Sequence Set Browser

 

ACIE00000000.2 Fusobacterium varium ATCC 27725

Master
# of Contigs: 39
# of Proteins: 3,008
# of Scaffolds/Chrs: 11
Total length: 3,297,001 bp
BioProject: PRJNA32423
BioSample: SAMN02463688
Keywords: WGS
Annotation: Contigs
Organism: Fusobacterium varium ATCC 27725show lineagehide lineage
Biosource:
/culture_collection = ATCC:27725
/mol_type = genomic
/strain = ATCC 27725
WGS: ACIE02000001:ACIE02000039
Scaffolds: GL987995:GL988005
11 scaffolds, total length is 3,299,801 bases
Reference:
The Genome Sequence of Fusobacterium varium ATCC 27725 : Unpublished – show 48 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Ambrose,C.E., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (20-MAR-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 42 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (31-MAY-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 48 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Ambrose,C.E., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform

On Jul 20, 2011 this sequence version replaced gi:226332517.

The Fusobacterium varium ATCC 27725 whole genome shotgun (WGS) project has the project accession ACIE00000000. This version of the project (02) has the accession number ACIE02000000, and consists of sequences ACIE02000001-ACIE02000039.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Strauss, J.C., Ambrose, C.E., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Bacteria provided by Moore, W.E. and Holdeman, L.V. (American Type Culture Collection - ATCC). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal.

Product names were updated in June 2013.

##Genome-Assembly-Data-START##
Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : Newbler v. 2.1-PreRelease-4/28/2009
Assembly Name : Fuso_varium_ATCC_27725_V2
Genome Coverage : 23x
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:ACIE02.1.gbff.gz 2.1 Mb
FASTA:ACIE02.1.fsa_nt.gz 956.4 kb
ASN.1:ACIE02.1.bbs.gz 1.6 Mb