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Sequence Set Browser


ACHS00000000.1 Xanthomonas vasicola pv. vasculorum NCPPB 702

# of Contigs: 488 (5 are dead)
# of Proteins: 0
# of Scaffolds/Chrs: 97 (1 is dead)
Total length: 5,425,342 bp
BioProject: PRJNA31213
BioSample: SAMN00002876
Keywords: WGS
Organism: Xanthomonas vasicola pv. vasculorum NCPPB 702show lineagehide lineage
/culture_collection = NCPPB:702
/mol_type = genomic
/pathovar = vasculorum
/strain = NCPPB702
WGS: ACHS01000001:ACHS01000488
Scaffolds: GG699232:GG699328
97 scaffolds, total length is 5,333,718 bases
Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt : FEMS Microbiol. Lett. 310 (2), 182-192 (2010) – show 9 authorshide authors
Studholme,D.J., Kemen,E., Maclean,D., Schornack,S., Aritua,V., Thwaites,R., Grant,M., Smith,J., Jones,J.D.
Submitted (21-AUG-2009) The Sainsbury Laboratory, Colney Lane, Norwich, Norfolk NR4 7UH, UK – Smith,J., Grant,M., Kemen,E., Jones,J.D.G., Studholme,D.J.

The Xanthomonas vasicola pv. vasculorum NCPPB 702 whole genome shotgun (WGS) project has the project accession ACHS00000000. This version of the project (01) has the accession number ACHS01000000, and consists of sequences ACHS01000001-ACHS01000488.

Strain obtained from the National Collection of Plant Pathogenic Bacteria In Sept 2015 contigs ACHS01000178, ACHS01000318, ACHS01000486, ACHS01000196 and ACHS01000197 were suppressed because their sequences could not be confirmed. Scaffold GG699290 was suppressed because its only components (ACHS01000196 and ACHS01000197) were suppressed, and scaffolds GG699286, GG699311 and GG699328 were updated to replace the component that had been suppressed by a gap of the same size.

Assembly Method : Velvet v. 2009
Genome Coverage : 100x
Sequencing Technology : Solexa
GenBank:ACHS01.1.gbff.gz 2.1 Mb
FASTA:ACHS01.1.fsa_nt.gz 1.4 Mb
ASN.1:ACHS01.1.bbs.gz 1.1 Mb