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Sequence Set Browser

 

ACHN00000000.1 Lactobacillus acidophilus ATCC 4796

Master
# of Contigs: 69
# of Proteins: 2,020
# of Scaffolds/Chrs: 38
Total length: 1,999,667 bp
BioProject: PRJNA31477
BioSample: SAMN00001471
Keywords: WGS
Annotation: Contigs
Organism: Lactobacillus acidophilus ATCC 4796show lineagehide lineage
Biosource:
/culture_collection = ATCC:4796
/mol_type = genomic genomic
/strain = ATCC 4796
WGS: ACHN01000001:ACHN01000069
Scaffolds: GG669566:GG669603
38 scaffolds, total length is 2,020,500 bases
Submission:
Submitted (09-JAN-2009) Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA – show 62 authorshide authors
Qin,X., Bachman,B., Battles,P., Bell,A., Bess,C., Bickham,C., Chaboub,L., Chen,D., Coyle,M., Deiros,D.R., Dinh,H., Forbes,L., Fowler,G., Francisco,L., Fu,Q., Gubbala,S., Hale,W., Han,Y., Hemphill,L., Highlander,S.K., Hirani,K., Hogues,M., Jackson,L., Jakkamsetti,A., Javaid,M., Jiang,H., Korchina,V., Kovar,C., Lara,F., Lee,S., Mata,R., Mathew,T., Moen,C., Morales,K., Munidasa,M., Nazareth,L., Ngo,R., Nguyen,L., Okwuonu,G., Ongeri,F., Patil,S., Petrosino,J., Pham,C., Pham,P., Pu,L.-L., Puazo,M., Raj,R., Reid,J., Rouhana,J., Saada,N., Shang,Y., Simmons,D., Thornton,R., Warren,J., Weissenberger,G., Zhang,J., Zhang,L., Zhou,C., Zhu,D., Muzny,D., Worley,K., Gibbs,R.

The Lactobacillus acidophilus ATCC 4796 whole genome shotgun (WGS) project has the project accession ACHN00000000. This version of the project (01) has the accession number ACHN01000000, and consists of sequences ACHN01000001-ACHN01000069.

This sequence is generated as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information. The sequenced strain was obtained from ATCC. The genomic DNA was prepared from a single bacterial isolate. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data and at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data. The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifescience Newbler assembler. The contigs from the Newbler assembly were aligned to the Illumina/Solexa data with mapping tools such as Mosaic and Crossmatch and these data were used for error correction for this version of the draft assembly. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90% of a core set of bacterial genes are found with > 30% identity and > 30% length; more than 90% of the bases in the assembly have more than 5 fold sequence coverage, the contig N50 length is greater than 5kb, the scaffold N50 length is greater than 20kb, and there is less than 1 gap per 5kb). This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Genome Coverage: 11x Sequencing Technology: 454; ABI; Solexa/Illumina Annotation was added to the contigs in April 2009.

Product names were updated in June 2013.

Contigs
Proteins
Download

Contigs:

GenBank:ACHN01.1.gbff.gz 1.4 Mb
FASTA:ACHN01.1.fsa_nt.gz 602 kb
ASN.1:ACHN01.1.bbs.gz 1.1 Mb

Proteins:

GenPept:ACHN01P.1.gnp.gz 623.5 kb
FASTA:ACHN01P.1.fsa_aa.gz 385.8 kb
ASN.1:ACHN01P.1.bbs.gz 464.8 kb
History
Minor Version Create Date
1 03/10/2009
7 11/11/2017