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Sequence Set Browser


ACFV00000000.1 Callithrix jacchus

# of Contigs: 202,483
# of Proteins: 0
# of Scaffolds/Chrs: 8,534
Total length: 2,762,736,592 bp
BioProject: PRJNA20401
BioSample: SAMN02981242
Keywords: WGS
Organism: Callithrix jacchusshow lineagehide lineage
/mol_type = genomic
WGS: ACFV01000001:ACFV01202483
Scaffolds: CM000856:CM000879, GL282473:GL290982
8,534 scaffolds, total length is 5,630,812,860 bases
6.6x PCAP assembly of the genome of Callithrix jacchus : Unpublished – show 6 authorshide authors
Warren,W., Ye,L., Minx,P., Worley,K., Gibbs,R., Wilson,R.K.
Submitted (24-MAR-2009) Genome Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Avenue, St. Louis, MO 63108, USA – Warren,W., Ye,L., Minx,P., Wilson,R.K.

The Callithrix jacchus whole genome shotgun (WGS) project has the project accession ACFV00000000. This version of the project (01) has the accession number ACFV01000000, and consists of sequences ACFV01000001-ACFV01202483.

The marmoset (Callithrix jacchus) genome was sequenced to 6X coverage in collaboration with the Baylor University College of Medicine Human Genome Sequencing Center (BCM-HGSC). The assembly consists of whole genome shotgun plasmid, fosmid and BAC end sequences. The DNA source used for the plasmid and fosmid libraries (female, animal id# 186/17066) was kindly provided by Dr. Suzette Tardif, Southwestern National Primate Research Center (San Antonio, Texas). The DNA source for the CHORI-259 BAC library was male and the full brother of the female used for whole genome shotgun sequencing (# 186/17066). The combined sequence reads were assembled using the PCAP software (Genome Res. 13(9):2164-70 2003) and filtered for all known non-marmoset sequence contaminants. This assembly is referred to as Callithrix jacchus-3.2. For questions regarding this marmoset assembly please visit our marmoset genome web page and contact the designated person for marmoset. Funding for the sequence characterization of the marmoset genome was provided by the National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH).

Assembly Method : PCAP v. 2009
Assembly Name : Callithrix jacchus-3.2
Genome Coverage : 6.6x
Sequencing Technology : ABI 3730
Minor Version Create Date
1 01/21/2010
7 11/11/2017
8 11/18/2017
9 11/18/2017