Sign in to NCBI
skip to main content

Sequence Set Browser

 

ACDX00000000.2 Neisseria mucosa ATCC 25996

Master
# of Contigs: 67
# of Proteins: 3,148
Total length: 2,578,748 bp
BioProject: PRJNA30477
BioSample: SAMN00008841
Keywords: WGS
Annotation: Contigs
Organism: Neisseria mucosa ATCC 25996show lineagehide lineage
Biosource:
/culture_collection = ATCC:25996
/mol_type = genomic
/strain = ATCC 25996
WGS: ACDX02000001:ACDX02000067
Submission:
Submitted (13-JAN-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 16 authorshide authors
Fulton,L., Clifton,S., Chinwalla,A.T., Mitreva,M., Sodergren,E., Weinstock,G., Clifton,S., Dooling,D.J., Fulton,B., Minx,P., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (24-AUG-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (20-OCT-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.

On Sep 4, 2009 this sequence version replaced gi:222527674.

The Neisseria mucosa ATCC 25996 whole genome shotgun (WGS) project has the project accession ACDX00000000. This version of the project (02) has the accession number ACDX02000000, and consists of sequences ACDX02000001-ACDX02000067.

Neisseria mucosa (no 16S rDNA gene sequence available) is a member of the Proteobacteria division of the domain bacteria and has been isolated from the pharynx (ATCC 25996). We have performed one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. This work was supported by the National Human Genome Research Institute and the NIH Roadmap Human Microbiome Project [http://nihroadmap.nih.gov/hmp/]. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Genome Coverage: 30.2x Sequencing Technology: 454 Annotation was added to the contigs in January 2010.

Product names were updated in June 2013.

Contigs
Proteins
Download
GenBank:ACDX02.1.gbff.gz 1.9 Mb
FASTA:ACDX02.1.fsa_nt.gz 770.4 kb
ASN.1:ACDX02.1.bbs.gz 1.5 Mb