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Sequence Set Browser

 

ACDM00000000.2 Escherichia sp. 4_1_40B

Master
# of Contigs: 65
# of Proteins: 4,498
# of Scaffolds/Chrs: 8
Total length: 4,905,506 bp
BioProject: PRJNA32467
BioSample: SAMN02463705
Keywords: WGS
Annotation: Contigs
Organism: Escherichia sp. 4_1_40Bshow lineagehide lineage
Biosource:
/host = Homo sapiens
/isolation_source = gastrointestinal tract
/mol_type = genomic
/strain = 4_1_40B
WGS: ACDM02000001:ACDM02000065
Scaffolds: JH660539:JH660546
8 scaffolds, total length is 4,911,206 bases
Reference:
The Genome Sequence of Escherichia coli 4_1_40B : Unpublished – show 46 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Ambrose,C., Strauss,J., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (05-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 42 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (12-OCT-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 46 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Ambrose,C., Strauss,J., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform

On May 2, 2012 this sequence version replaced gi:223713598.

The Escherichia sp. 4_1_40B whole genome shotgun (WGS) project has the project accession ACDM00000000. This version of the project (02) has the accession number ACDM02000000, and consists of sequences ACDM02000001-ACDM02000065.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Ambrose, C., Strauss, J.C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Bacteria provided by Ambrose, C., Strauss, J.C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal.

##Genome-Assembly-Data-START##
Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : Newbler v. 2.0.0-PreRelease-04/10/2008
Assembly Name : Escherichia_sp_4_1_40B_V2
Genome Coverage : 34x
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:ACDM02.1.gbff.gz 3.2 Mb
FASTA:ACDM02.1.fsa_nt.gz 1.4 Mb
ASN.1:ACDM02.1.bbs.gz 2.5 Mb