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Sequence Set Browser

 

ACDL00000000.1 Escherichia coli D9

Master
# of Contigs: 98
# of Proteins: 4,721
# of Scaffolds/Chrs: 31
Total length: 4,717,340 bp
BioProject: PRJNA32507
BioSample: SAMN02463720
Keywords: WGS
Annotation: Contigs, Scaffolds
Organism: Escherichia coli D9show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = D9
WGS: ACDL01000001:ACDL01000098
Scaffolds: GG657384:GG657414
31 scaffolds, 4,721 proteins, total length is 4,764,345 bases
Reference:
The Genome Sequence of Shigella sp. D9 : Unpublished – show 44 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (05-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 44 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform

The Escherichia coli D9 whole genome shotgun (WGS) project has the project accession ACDL00000000. This version of the project (01) has the accession number ACDL01000000, and consists of sequences ACDL01000001-ACDL01000098.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Gene Calling Method: GeneMark; Glimmer; Metagene; PFAM; Blast to non-redundant protein database; Manual curation Annotation was added to the scaffolds in May 2011.

Product names were updated in June 2013 Originally identified as Shigella sp. D9.

##Genome-Assembly-Data-START##
Genome Coverage : 16.95x
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:ACDL01.1.gbff.gz 2 Mb
FASTA:ACDL01.1.fsa_nt.gz 1.4 Mb
ASN.1:ACDL01.1.bbs.gz 1.2 Mb