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Sequence Set Browser

 

ACDI00000000.2 Bacteroides dorei 5_1_36/D4

Master
# of Contigs: 45
# of Proteins: 4,422
# of Scaffolds/Chrs: 10
Total length: 5,534,748 bp
BioProject: PRJNA32451
BioSample: SAMN02463698
Keywords: WGS
Annotation: Contigs
Organism: Bacteroides dorei 5_1_36/D4show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = 5_1_36/D4
WGS: ACDI02000001:ACDI02000045
Scaffolds: JH114320:JH114329
10 scaffolds, total length is 5,538,248 bases
Reference:
The Genome Sequence of Bacteroides dorei 5_1_36/D4 : Unpublished – show 49 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Sibley,C., White,A., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (03-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 44 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Lander,E., Nusbaum,C., Ilzarbe,M., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (12-MAY-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 49 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Sibley,C., White,A., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform

On Sep 2, 2011 this sequence version replaced gi:223712964.

The Bacteroides dorei 5_1_36/D4 whole genome shotgun (WGS) project has the project accession ACDI00000000. This version of the project (02) has the accession number ACDI02000000, and consists of sequences ACDI02000001-ACDI02000045.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Strauss, J.C., Sibley, C., White, A., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Bacteria provided by Strauss, J.C., Sibley, C., White, A., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal.

Product names were updated in June 2013.

##Genome-Assembly-Data-START##
Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : Newbler v. 2.1-PreRelease-4/28/2009
Assembly Name : Bact_dorei_5_1_36_D4_V2
Genome Coverage : 32x
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:ACDI02.1.gbff.gz 3.6 Mb
FASTA:ACDI02.1.fsa_nt.gz 1.6 Mb
ASN.1:ACDI02.1.bbs.gz 2.7 Mb