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Sequence Set Browser

 

ACDG00000000.2 Fusobacterium necrophorum D12

Master
# of Contigs: 118
# of Proteins: 1,833
# of Scaffolds/Chrs: 17
Total length: 1,950,825 bp
BioProject: PRJNA32485
BioSample: SAMN02463712
Keywords: WGS
Annotation: Contigs
Organism: Fusobacterium necrophorum D12show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = D12
WGS: ACDG02000001:ACDG02000118
Scaffolds: GL988012:GL988028
17 scaffolds, total length is 1,960,925 bases
Reference:
The Genome Sequence of Fusobacterium sp. D12 : Unpublished – show 48 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Ambrose,C.E., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (10-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 44 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Ambrose,C., Lander,E., Nusbaum,C., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (31-MAY-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 48 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Ambrose,C.E., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform

On Jul 20, 2011 this sequence version replaced gi:224461874.

The Fusobacterium necrophorum D12 whole genome shotgun (WGS) project has the project accession ACDG00000000. This version of the project (02) has the accession number ACDG02000000, and consists of sequences ACDG02000001-ACDG02000118.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by Strauss, J.C., Ambrose, C.E., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Bacteria provided by Strauss, J.C., Ambrose, C.E., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal.

Product names were updated in June 2013.

##Genome-Assembly-Data-START##
Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : Newbler v. 2.1-PreRelease-4/28/2009
Assembly Name : Fuso_sp_D12_V2
Genome Coverage : 15x
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:ACDG02.1.gbff.gz 1.4 Mb
FASTA:ACDG02.1.fsa_nt.gz 583.5 kb
ASN.1:ACDG02.1.bbs.gz 1 Mb