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Sequence Set Browser

 

ACCP00000000.1 Micromonas pusilla CCMP1545

Master
# of Contigs: 497
# of Proteins: 10,242
# of Scaffolds/Chrs: 21
Total length: 21,706,984 bp
BioProject: PRJNA15678
BioSample: SAMN02953743
Keywords: WGS
Annotation: Scaffolds
Organism: Micromonas pusilla CCMP1545show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = CCMP1545
WGS: ACCP01000001:ACCP01000497
Scaffolds: GG663735:GG663755
21 scaffolds, 10,242 proteins, total length is 21,958,260 bases
Reference:
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas : Science 324 (5924), 268-272 (2009) – show 51 authorshide authors
Worden,A.Z., Lee,J.H., Mock,T., Rouze,P., Simmons,M.P., Aerts,A.L., Allen,A.E., Cuvelier,M.L., Derelle,E., Everett,M.V., Foulon,E., Grimwood,J., Gundlach,H., Henrissat,B., Napoli,C., McDonald,S.M., Parker,M.S., Rombauts,S., Salamov,A., Von Dassow,P., Badger,J.H., Coutinho,P.M., Demir,E., Dubchak,I., Gentemann,C., Eikrem,W., Gready,J.E., John,U., Lanier,W., Lindquist,E.A., Lucas,S., Mayer,K.F., Moreau,H., Not,F., Otillar,R., Panaud,O., Pangilinan,J., Paulsen,I., Piegu,B., Poliakov,A., Robbens,S., Schmutz,J., Toulza,E., Wyss,T., Zelensky,A., Zhou,K., Armbrust,E.V., Bhattacharya,D., Goodenough,U.W., Van de Peer,Y., Grigoriev,I.V.
Submission:
Submitted (21-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 17 authorshide authors
Grigoriev,I.V., Aerts,A.L., Rombauts,S., Van der Peer,Y., Grimwood,J., Salamov,A., Zhou,K., Lucas,S., Glavina del Rio,T., Tice,H., Bruce,D., Pitluck,S., Lindquist,E., VanWye,J., Cuvelier,M.L., Worden,A.Z., Micromonas Genome Consortium

The Micromonas pusilla CCMP1545 whole genome shotgun (WGS) project has the project accession ACCP00000000. This version of the project (01) has the accession number ACCP01000000, and consists of sequences ACCP01000001-ACCP01000497.

URL -- http://www.jgi.doe.gov/MicromonasCCMP1545 JGI Project ID: 4000188 Organism available from the Culture Collection of Marine Phytoplankton: CCMP1545 (ccmp.bigelow.org) Contacts: Alexandra Z. Worden (azworden@mbari.org) Igor Grigoriev (IVGrigoriev@lbl.gov) Annotation done by the Micromonas genome consortium as identified in the authorship listed as reference 1 above. This organism was originally isolated by M. Parke at approximately 50.36 N, 4.17 W (English Channel/North Atlantic waters near Plymouth, England) in 1950 and was axenic upon receipt in Worden Lab from the CCMP. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. We welcome collaborative interaction on the project. (http://www.genome.gov/page.cfm?pageID=10506376) Assembly Name: Micromonas pusilla CCMP1545 v2.0 Genome Coverage: 8x Sequencing Technology: ABI 3730 Annotated scaffolds were added in April 2009.

Contigs
Download
GenBank:ACCP01.1.gbff.gz 9 Mb
FASTA:ACCP01.1.fsa_nt.gz 6.1 Mb
ASN.1:ACCP01.1.bbs.gz 4.8 Mb
History
Minor Version Create Date
1 04/07/2009
5 11/11/2017
6 11/18/2017