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Sequence Set Browser

 

ACBZ00000000.1 Blautia hydrogenotrophica DSM 10507

Master
# of Contigs: 233
# of Proteins: 3,869
# of Scaffolds/Chrs: 33
Total length: 3,565,428 bp
BioProject: PRJNA21007
BioSample: SAMN02415620
Keywords: WGS
Annotation: Contigs
Organism: Blautia hydrogenotrophica DSM 10507show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = DSM 10507
/synonym = Ruminococcus hydrogenotrophicus DSM 10507
WGS: ACBZ01000001:ACBZ01000233
Scaffolds: GG657678:GG657710
33 scaffolds, total length is 3,626,943 bases
Reference:
Draft genome sequence of Blautia hydrogenotrophica DSM 10507 (Ruminococcus hydrogenotrophicus DSM 10507) : Unpublished – show 7 authorshide authors
Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D., Gordon,J.
Submission:
Submitted (14-JAN-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 11 authorshide authors
Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R., Wilson,R.K.

The Blautia hydrogenotrophica DSM 10507 whole genome shotgun (WGS) project has the project accession ACBZ00000000. This version of the project (01) has the accession number ACBZ01000000, and consists of sequences ACBZ01000001-ACBZ01000233.

Blautia hydrogenotrophica (GenBank Accession Number for 16S rDNA gene: X95624*) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM# 10507). * The available GenBank Accession Number is for the 16S rDNA gene of a related strain of Blautia hydrogenotrophica, not the sequenced strain. This is a Newbler assembly (http://www.454.com/enabling-technology/the-software.asp) comprised of 1/2 plate FLX PE 454 Data with a Q20 coverage of 21.8X. This sequenced strain is part of a comprehensive, sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine, the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project, or any other GSC genome project, please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Contigs
Proteins
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GenBank:ACBZ01.1.gbff.gz 2.9 Mb
FASTA:ACBZ01.1.fsa_nt.gz 1.1 Mb
ASN.1:ACBZ01.1.bbs.gz 2.2 Mb