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Sequence Set Browser

 

ACAB00000000.2 Bacteroides sp. D1

Master
# of Contigs: 120
# of Proteins: 4,686
# of Scaffolds/Chrs: 22
Total length: 5,964,759 bp
BioProject: PRJNA32447
BioSample: SAMN02463696
Keywords: WGS
Annotation: Contigs
Organism: Bacteroides sp. D1show lineagehide lineage
Biosource:
/host = Homo sapiens
/isolation_source = gastrointestinal tract
/mol_type = genomic
/strain = D1
WGS: ACAB02000001:ACAB02000120
Scaffolds: JH114330:JH114351
22 scaffolds, total length is 5,974,559 bases
Reference:
The Genome Sequence of Bacteroides sp. D1 : Unpublished – show 49 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Sibley,C., White,A., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (09-DEC-2008) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 44 authorshide authors
Ward,D., Young,S.K., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Allen-Vercoe,E., Strauss,J., Sibley,C., White,A., Lander,E., Nusbaum,C., Ilzarbe,M., Galagan,J., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (13-MAY-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 49 authorshide authors
Earl,A., Ward,D., Feldgarden,M., Gevers,D., Strauss,J., Sibley,C., White,A., Allen-Vercoe,E., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M., Berlin,A., Brown,A., Chapman,S.B., Chen,Z., Dunbar,C., Freedman,E., Gearin,G., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heiman,D., Howarth,C., Larson,L., Lui,A., MacDonald,P.J.P., Mehta,T., Montmayeur,A., Murphy,C., Neiman,D., Pearson,M., Priest,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Wortman,J., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform

On Sep 2, 2011 this sequence version replaced gi:222159359.

The Bacteroides sp. D1 whole genome shotgun (WGS) project has the project accession ACAB00000000. This version of the project (02) has the accession number ACAB02000000, and consists of sequences ACAB02000001-ACAB02000120.

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA and bacteria provided by Strauss, J.C., Sibley, C., White, A., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). Please be aware that the annotation is done automatically with little or no manual curation. Gene Calling Method: Prodigal.

Product names were updated in June 2013.

##Genome-Assembly-Data-START##
Finishing Goal : High-Quality Draft
Current Finishing Status : High-Quality Draft
Assembly Method : Newbler v. 2.1-PreRelease-4/28/2009
Assembly Name : Bacteroides_sp_D1_V2
Genome Coverage : 32x
Sequencing Technology : 454
##Genome-Assembly-Data-END##
Contigs
Proteins
Download
GenBank:ACAB02.1.gbff.gz 4 Mb
FASTA:ACAB02.1.fsa_nt.gz 1.8 Mb
ASN.1:ACAB02.1.bbs.gz 3 Mb