Sign in to NCBI
skip to main content

Sequence Set Browser

 

ABYI00000000.2 [Clostridium] hylemonae DSM 15053

Master
# of Contigs: 167
# of Proteins: 3,976
# of Scaffolds/Chrs: 123
Total length: 3,885,459 bp
BioProject: PRJNA30369
BioSample: SAMN00008808
Keywords: WGS
Annotation: Contigs
Organism: [Clostridium] hylemonae DSM 15053show lineagehide lineage
Biosource:
/culture_collection = DSM:15053
/mol_type = genomic
/strain = DSM 15053
WGS: ABYI02000001:ABYI02000167
Scaffolds: GG657759:GG657881
123 scaffolds, total length is 3,889,859 bases
Reference:
Draft genome sequence of Clostridium hylemonae (DSM 15053) : Unpublished – show 7 authorshide authors
Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D., Gordon,J.
Submission:
Submitted (16-OCT-2008) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 11 authorshide authors
Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (02-FEB-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 11 authorshide authors
Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R., Wilson,R.K.

On Feb 26, 2009 this sequence version replaced gi:209948717.

The [Clostridium] hylemonae DSM 15053 whole genome shotgun (WGS) project has the project accession ABYI00000000. This version of the project (02) has the accession number ABYI02000000, and consists of sequences ABYI02000001-ABYI02000167.

Clostridium hylemonae (GenBank Accession Number for 16S rDNA gene: AB023972) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 15053). This is a Newbler assembly (http://www.454.com/enabling-technology/the-software.asp) consisting of one half plate of a Roche 454 FLX paired end library run with a Q20 coverage of 18.9X. We have performed one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. This sequenced strain is part of a comprehensive, sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine, the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project, or any other GSC genome project, please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.

Product names were updated in June 2013.

Contigs
Proteins
Download
GenBank:ABYI02.1.gbff.gz 2.9 Mb
FASTA:ABYI02.1.fsa_nt.gz 1.1 Mb
ASN.1:ABYI02.1.bbs.gz 2.6 Mb