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Sequence Set Browser

 

ABXH00000000.2 Collinsella intestinalis DSM 13280

Master
# of Contigs: 55
# of Proteins: 1,784
# of Scaffolds/Chrs: 3
Total length: 1,804,297 bp
BioProject: PRJNA29307
BioSample: SAMN00008813
Keywords: WGS
Annotation: Contigs
Organism: Collinsella intestinalis DSM 13280show lineagehide lineage
Biosource:
/culture_collection = DSM:13280
/mol_type = genomic
/strain = DSM 13280
WGS: ABXH02000001:ABXH02000055
Scaffolds: GG692710:GG692712
3 scaffolds, total length is 1,809,497 bases
Submission:
Submitted (01-OCT-2008) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 12 authorshide authors
Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Thiruvilangam,P., Bhonagiri,V., Nash,W.E., Mardis,E.R., Wilson,R.K.
Submission:
Submitted (29-APR-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authors
Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.

On May 8, 2009 this sequence version replaced gi:208430176.

The Collinsella intestinalis DSM 13280 whole genome shotgun (WGS) project has the project accession ABXH00000000. This version of the project (02) has the accession number ABXH02000000, and consists of sequences ABXH02000001-ABXH02000055.

Collinsella intestinalis (GenBank Accession Number for 16S rDNA gene: AB031063) is a member of the Actinobacteria division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 13280). We have performed one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. This work was supported by the National Human Genome Research Institute and the NIH Roadmap Human Microbiome Project [http://nihroadmap.nih.gov/hmp/]. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Genome Coverage: 37.2x Sequencing Technology: 454.

Product names were updated in June 2013.

Contigs
Proteins
Download
GenBank:ABXH02.1.gbff.gz 1.3 Mb
FASTA:ABXH02.1.fsa_nt.gz 543.7 kb
ASN.1:ABXH02.1.bbs.gz 1 Mb