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ABXH00000000.2 Collinsella intestinalis DSM 13280
# of Contigs: 55 # of Proteins: 1,784 # of Scaffolds/Chrs: 3 Total length: 1,804,297 bp BioProject: PRJNA29307 BioSample: SAMN00008813 Keywords: WGS Annotation: Contigs Organism: Collinsella intestinalis DSM 13280 – show lineagehide lineage Biosource:/culture_collection = DSM:13280/mol_type = genomic/strain = DSM 13280 WGS: ABXH02000001:ABXH02000055 Scaffolds: GG692710:GG6927123 scaffolds, total length is 1,809,497 bases Submission:Submitted (01-OCT-2008) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 12 authorshide authorsFulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Thiruvilangam,P., Bhonagiri,V., Nash,W.E., Mardis,E.R., Wilson,R.K. Submission:Submitted (29-APR-2009) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 27 authorshide authorsWeinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R., Wilson,R.K.
On May 8, 2009 this sequence version replaced gi:208430176.
The Collinsella intestinalis DSM 13280 whole genome shotgun (WGS) project has the project accession ABXH00000000. This version of the project (02) has the accession number ABXH02000000, and consists of sequences ABXH02000001-ABXH02000055.
Collinsella intestinalis (GenBank Accession Number for 16S rDNA gene: AB031063) is a member of the Actinobacteria division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 13280). We have performed one round of automated sequence improvement (pre-finishing), along with manual improvement that includes breaking apart any mis-assembly, and making manual joins where possible. Manual edits also are made where the consensus appears to be incorrect. All low quality data on the ends of contigs is removed. Contigs are ordered and oriented where possible. This work was supported by the National Human Genome Research Institute and the NIH Roadmap Human Microbiome Project [http://nihroadmap.nih.gov/hmp/]. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Genome Coverage: 37.2x Sequencing Technology: 454.
Product names were updated in June 2013.