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Sequence Set Browser

 

ABWO00000000.1 Tyzzerella nexilis DSM 1787

Master
# of Contigs: 316
# of Proteins: 4,239
# of Scaffolds/Chrs: 99
Total length: 3,861,016 bp
BioProject: PRJNA28659
BioSample: SAMN00000730
Keywords: WGS
Annotation: Contigs
Organism: Tyzzerella nexilis DSM 1787show lineagehide lineage
Biosource:
/culture_collection = DSM:1787
/mol_type = genomic
/strain = DSM 1787
WGS: ABWO01000001:ABWO01000316
Scaffolds: DS995337:DS995353, DS995602:DS995683
99 scaffolds, total length is 3,995,628 bases
Reference:
Draft genome sequence of Clostridium nexile (DSM 1787) : Unpublished – show 7 authorshide authors
Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D., Gordon,J.
Submission:
Submitted (17-SEP-2008) Genome Sequencing Center, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA – show 12 authorshide authors
Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Thiruvilangam,P., Bhonagiri,V., Nash,W.E., Mardis,E.R., Wilson,R.K.

The Tyzzerella nexilis DSM 1787 whole genome shotgun (WGS) project has the project accession ABWO00000000. This version of the project (01) has the accession number ABWO01000000, and consists of sequences ABWO01000001-ABWO01000316.

Clostridium nexile (GenBank Accession Number for 16S rDNA gene: X73443) is a member of the Firmicutes division of the domain bacteria and has been isolated from human feces. The sequenced strain was obtained from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ) (DSM 1787). This is a Newbler assembly (http://www.454.com/enabling-technology/the-software.asp) consisting of one full Roche 454 FLX fragment library run and two full Roche 454 FLX paired end library runs with a Q20 coverage of 33.6X. This sequenced strain is part of a comprehensive, sequence-based survey of members of the normal human gut microbiota. A joint effort of the WU-GSC and the Center for Genome Sciences at Washington University School of Medicine, the purpose of this survey is to provide the general scientific community with a broad view of the gene content of 100 representatives of the major divisions represented in the intestine's microbial community. This information should provide a frame of reference for analyzing metagenomic studies of the human gut microbiome. Further details of this effort are described in a white paper entitled 'Extending Our View of Self: the Human Gut Microbiome Initiative (HGMI)' (http://www.genome.gov/Pages/Research/Sequencing/SeqProposals/HGMISeq.pdf). These studies are supported by National Human Genome Research Institute. Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. For answers to your questions regarding this assembly or project, or any other GSC genome project, please visit our Genome Groups web page (http://genome.wustl.edu/genome_group_index.cgi) and email the designated contact person. Annotation was added to the contigs in October 2008. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Product names were updated in June 2013.

Contigs
Proteins
Download
GenBank:ABWO01.1.gbff.gz 3.1 Mb
FASTA:ABWO01.1.fsa_nt.gz 1.1 Mb
ASN.1:ABWO01.1.bbs.gz 2.3 Mb