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Sequence Set Browser


ABVN00000000.1 marine metagenome

# of Contigs: 32,674
# of Proteins: 0
Total length: 3,636,518 bp
BioProject: PRJNA30445
BioSample: SAMN00000302
Keywords: WGS
Organism: marine metagenomeshow lineagehide lineage
/collection_date = 10-Oct-2006
/country = USA: La Jolla, CA
/isolation_source = coastal surface water enriched for Synechococcus
/mol_type = genomic genomic
WGS: ABVN01000001:ABVN01032674
Coastal Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity : Environ. Microbiol. 11 (2), 349-359 (2009) – Palenik,B., Ren,Q., Tai,V., Paulsen,I.T.
Submitted (31-JUL-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – Palenik,B., Ren,Q., Tai,V., Paulsen,I.T.

The marine metagenome whole genome shotgun (WGS) project has the project accession ABVN00000000. This version of the project (01) has the accession number ABVN01000000, and consists of sequences ABVN01000001-ABVN01032674.

Coastal surface water was collected from the end of the pier located at the Scripps Institution of Oceanography, La Jolla, CA on October 10, 2006. A concentrated marine picoplankton sample was isolated by filtration between a size range of 0.45-2.0 M. Synechococcus cells were concentrated by flow cytometry. Whole genomic DNA was prepared from the Synechococcus-enriched metagenomic sample, amplified by Genomphi and sequenced by 454 sequencing. This version of the project, JCVI-synechococcus-v1.0, represents assemblies of 3.94x to 16.8x 454 coverage, plus one outlier at 31.4X coverage.

GenBank:ABVN01.1.gbff.gz 3.1 Mb
FASTA:ABVN01.1.fsa_nt.gz 1.4 Mb
ASN.1:ABVN01.1.bbs.gz 1.5 Mb