skip to main content

Sequence Set Browser

 

ABSJ00000000.1 gamma proteobacterium HTCC5015

Master
# of Contigs: 62
# of Proteins: 2,459
# of Scaffolds/Chrs: 30
Total length: 2,612,424 bp
BioProject: PRJNA19309
BioSample: SAMN02436275
Keywords: WGS
Annotation: Scaffolds
Organism: gamma proteobacterium HTCC5015show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = HTCC5015
WGS: ABSJ01000001:ABSJ01000062
Scaffolds: DS990598:DS990627
30 scaffolds, 2,459 proteins, total length is 2,625,605 bases
Reference:
Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015 : J. Bacteriol. 192 (14), 3838-3839 (2010) – show 7 authorshide authors
Thrash,J.C., Stingl,U., Cho,J.C., Ferriera,S., Johnson,J., Vergin,K.L., Giovannoni,S.J.
Submission:
Submitted (11-JUL-2008) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – show 10 authorshide authors
Lily,E., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M., Venter,J.C.

The gamma proteobacterium HTCC5015 whole genome shotgun (WGS) project has the project accession ABSJ00000000. This version of the project (01) has the accession number ABSJ01000000, and consists of sequences ABSJ01000001-ABSJ01000062.

With funding from the Gordon and Betty Moore Foundation (www.moore.org), the J. Craig Venter Institute (www.jcvi.org) is sequencing, assembling, and auto-annotating the genomes of approximately 165 marine microbes. These microbes were contributed by collaborators worldwide, and embody an array of physiological diversity, including carbon fixers, photoautotrophs, photoheterotrophs, nitrifiers, and methanotrophs. This work was designed to complement other ongoing research at JCVI and elsewhere to characterize the microbial biodiversity of marine and terrestrial environments through metagenomics profiling of environmental samples. Please be aware that the annotation is done automatically with little or no manual curation.

Contigs
Download
GenBank:ABSJ01.1.gbff.gz 1.1 Mb
FASTA:ABSJ01.1.fsa_nt.gz 793.6 kb
ASN.1:ABSJ01.1.bbs.gz 636.3 kb