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Sequence Set Browser

 

ABRL00000000.2 Oryza barthii

Master
# of Contigs: 25,409
# of Proteins: 0
# of Scaffolds/Chrs: 12
Total length: 305,732,604 bp
BioProject: PRJNA30379
BioSample: SAMN02953732
Keywords: WGS
Organism: Oryza barthiishow lineagehide lineage
Biosource:
/bio_material = IRGC:105608
/mol_type = genomic
WGS: ABRL02000001:ABRL02025409
Scaffolds: CM002639:CM002650
12 scaffolds, total length is 308,272,304 bases
Reference:
De Novo Next Generation Sequencing of Plant Genomes : Rice 2 (1), 35-43 (2009) – show 16 authorshide authors
Rounsley,S., Marri,P.R., Yu,Y., He,R., Sisneros,N., Goicoechea,J.L., Lee,S.J., Angelova,A., Kudrna,D., Luo,M., Affourtit,J., Desany,B., Knight,J., Niazi,F., Egholm,M., Wing,R.A.
Reference:
Oryza genome evolution : Unpublished – Wing,R.A.
Submission:
Submitted (09-JUL-2008) Arizona Genomics Institute/Bio5 Institute and Department of Plant Sciences, University of Arizona, Keating Bioresearch Building 1657 E. Helen St., Tucson, AZ 85719, USA – show 16 authorshide authors
Rounsley,S., Marri,P.R., Yu,Y., He,R., Sisneros,N., Goicoechea,J.L., Lee,S.J., Angelova,A., Kudrna,D., Luo,M., Affourtit,J., Desany,B., Knight,J., Niazi,F., Egholm,M., Wing,R.A.
Submission:
Submitted (11-MAR-2014) Arizona Genomics Institute / Plant Sciences, University of Arizona, 1657 E. Helen Street, Tucson, AZ 85719, USA – Wing,R.A.
Submission:
Submitted (08-MAY-2014) Arizona Genomics Institute / Plant Sciences, University of Arizona, 1657 E. Helen Street, Tucson, AZ 85719, USA – Wing,R.A.

On Mar 14, 2014 this sequence version replaced gi:227135066.

The Oryza barthii whole genome shotgun (WGS) project has the project accession ABRL00000000. This version of the project (02) has the accession number ABRL02000000, and consists of sequences ABRL02000001-ABRL02025409.

Chromosomes were updated in May 2014.

##Genome-Assembly-Data-START##
Assembly Method : AllPaths v. 44849; Newbler v. 2.8
Assembly Name : O.barthii_v1.3
Long Assembly Name : Oryza barthii whole genome assembly v1.3
Genome Coverage : 110.0x
Sequencing Technology : Illumina GAIIx; 454
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:ABRL02.1.gbff.gz 130.1 Mb
FASTA:ABRL02.1.fsa_nt.gz 90.2 Mb
ASN.1:ABRL02.1.bbs.gz 80.6 Mb