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Sequence Set Browser

 

ABQX00000000.1 soil metagenome

Master
# of Contigs: 878
# of Proteins: 0
Total length: 612,702 bp
BioProject: PRJNA20811
BioSample: SAMN02954285
Keywords: WGS
Organism: soil metagenomeshow lineagehide lineage
Biosource:
/collection_date = Jun-2007
/country = South Korea: Daejeon city
/environmental_sample
/isolation_source = viral metagenomic DNA from rice paddy soil
/lat_lon = 36.3875 N 127.3392 E
/metagenomic
/mol_type = genomic
WGS: ABQX01000001:ABQX01000878
Reference:
Amplification of uncultured single-stranded DNA viruses from rice paddy soil : Appl. Environ. Microbiol. 74 (19), 5975-5985 (2008) – show 9 authorshide authors
Kim,K.H., Chang,H.W., Nam,Y.D., Roh,S.W., Kim,M.S., Sung,Y., Jeon,C.O., Oh,H.M., Bae,J.W.
Submission:
Submitted (12-JUN-2008) Biological Resource Center, Korea Research Institute of Bioscience & Biotechnology, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea – show 9 authorshide authors
Kim,K.-H., Chang,H.-W., Nam,Y.-D., Roh,S.W., Sung,Y., Kim,M.-S., Jeon,C.-O., Oh,H.-M., Bae,J.-W.

The soil metagenome whole genome shotgun (WGS) project has the project accession ABQX00000000. This version of the project (01) has the accession number ABQX01000000, and consists of sequences ABQX01000001-ABQX01000878.

Putative viral metagenome project from rice paddy soil at Daejon City, South Korea. Viral DNA was purified using ultracentrifugation and sequential filtration, and DNA was amplified using multiple displacement amplification. Sequences were obtained from random cloning using pUC118 as a vector.

Contigs
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GenBank:ABQX01.1.gbff.gz 307.3 kb
FASTA:ABQX01.1.fsa_nt.gz 193.8 kb
ASN.1:ABQX01.1.bbs.gz 175.3 kb