Sign in to NCBI
skip to main content

Sequence Set Browser

 

ABQD00000000.1 Phaeodactylum tricornutum CCAP 1055/1

Master
# of Contigs: 177
# of Proteins: 9,488
# of Scaffolds/Chrs: 86
Total length: 24,612,623 bp
BioProject: PRJNA13152
BioSample: SAMN02953727
Keywords: WGS
Annotation: Scaffolds
Organism: Phaeodactylum tricornutum CCAP 1055/1show lineagehide lineage
Biosource:
/country = United Kingdom: Blackpool
/mol_type = genomic
/strain = CCAP 1055/1
WGS: ABQD01000001:ABQD01000177
Scaffolds: CM000605:CM000635, DS999253:DS999307
86 scaffolds, 9,488 proteins, total length is 25,045,652 bases
Reference:
The Phaeodactylum genome reveals the evolutionary history of diatom genomes : Nature 456 (7219), 239-244 (2008) – show 77 authorshide authors
Bowler,C., Allen,A.E., Badger,J.H., Grimwood,J., Jabbari,K., Kuo,A., Maheswari,U., Martens,C., Maumus,F., Otillar,R.P., Rayko,E., Salamov,A., Vandepoele,K., Beszteri,B., Gruber,A., Heijde,M., Katinka,M., Mock,T., Valentin,K., Verret,F., Berges,J.A., Brownlee,C., Cadoret,J.P., Chiovitti,A., Choi,C.J., Coesel,S., De Martino,A., Detter,J.C., Durkin,C., Falciatore,A., Fournet,J., Haruta,M., Huysman,M.J., Jenkins,B.D., Jiroutova,K., Jorgensen,R.E., Joubert,Y., Kaplan,A., Kroger,N., Kroth,P.G., La Roche,J., Lindquist,E., Lommer,M., Martin-Jezequel,V., Lopez,P.J., Lucas,S., Mangogna,M., McGinnis,K., Medlin,L.K., Montsant,A., Oudot-Le Secq,M.P., Napoli,C., Obornik,M., Parker,M.S., Petit,J.L., Porcel,B.M., Poulsen,N., Robison,M., Rychlewski,L., Rynearson,T.A., Schmutz,J., Shapiro,H., Siaut,M., Stanley,M., Sussman,M.R., Taylor,A.R., Vardi,A., von Dassow,P., Vyverman,W., Willis,A., Wyrwicz,L.S., Rokhsar,D.S., Weissenbach,J., Armbrust,E.V., Green,B.R., Van de Peer,Y., Grigoriev,I.V.
Submission:
Submitted (12-AUG-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 14 authorshide authors
Grigoriev,I., Grimwood,J., Kuo,A., Otillar,R.P., Salamov,A., Detter,J.C., Lindquist,E., Shapiro,H., Lucas,S., Glavina del Rio,T., Pitluck,S., Rokhsar,D., Bowler,C., Diatom Consortium

The Phaeodactylum tricornutum CCAP 1055/1 whole genome shotgun (WGS) project has the project accession ABQD00000000. This version of the project (01) has the accession number ABQD01000000, and consists of sequences ABQD01000001-ABQD01000177.

URL -- http://www.jgi.doe.gov/phaeodactylum JGI Project ID: 3634397 Contacts: Chris Bowler (cbowler@biologie.ens.fr) Igor Grigoriev (ivgrigoriev@lbl.gov) The clone of P. tricornutum that was sequenced is CCAP1055/1 and is available from the Culture collection of Algae and Protozoa (http://www.ccap.ac.uk). This clone represents a monoclonal culture derived from a fusiform cell in May 2003 from strain CCCP632, which was originally isolated in 1956 off Blackpool (U.K.). It has been maintained in culture continuously in F/2 medium. Annotation was done by the JGI Annotation team and the Diatom Consortium. Chromosomes 3 and 11 are complete and present in GenBank records CP001142 and CP001141, respectively. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Annotated scaffolds were added in December 2008.

Contigs
Download
GenBank:ABQD01.1.gbff.gz 10.2 Mb
FASTA:ABQD01.1.fsa_nt.gz 7.3 Mb
ASN.1:ABQD01.1.bbs.gz 5.8 Mb
History
Minor Version Create Date
1 10/10/2008
5 11/11/2017
6 11/18/2017