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Sequence Set Browser

 

ABPT00000000.1 microbial mat metagenome

Master
# of Contigs: 15,663
# of Proteins: 0
Total length: 9,803,980 bp
BioProject: PRJNA29617
BioSample: SAMN02954322
Keywords: WGS
Organism: microbial mat metagenomeshow lineagehide lineage
Biosource:
/collection_date = 13-Feb-2005
/country = Mexico
/environmental_sample
/isolation_source = Guerrero Negro Hypersaline Mat 05; altitude 310m AMSL; sample depth 1m below water level, 4-5mm depth into the mat
/lat_lon = 27.68908 N 113.9170 W
/metagenomic
/mol_type = genomic
WGS: ABPT01000001:ABPT01015663
Reference:
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat : Mol. Syst. Biol. 4, 198 (2008) – show 11 authorshide authors
Kunin,V., Raes,J., Harris,J.K., Spear,J.R., Walker,J.J., Ivanova,N., von Mering,C., Bebout,B.M., Pace,N.R., Bork,P., Hugenholtz,P.
Submission:
Submitted (10-MAY-2008) Microbial Ecology Program, US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 23 authorshide authors
Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Barry,K., Tringe,S., Pitluck,S., Kyrpides,N., Mavrommatis,K., Kunin,V., Raes,J., Harris,J.K., Spear,J.R., Walker,J.J., Ivanova,N., von Mering,C., Bebout,B.M., Pace,N.R., Bork,P., Hugenholtz,P.

The microbial mat metagenome whole genome shotgun (WGS) project has the project accession ABPT00000000. This version of the project (01) has the accession number ABPT01000000, and consists of sequences ABPT01000001-ABPT01015663.

Data will be made available at http://img.jgi.doe.gov/m JGI Project ID:4001577 Contact:Philip Hugenholtz (PHugenholtz@lbl.gov) habitat type:microbial mat; sampling site latitude:N27 41.345; sampling site longitude:W113.55.027; sampling site altitude:310 m AMSL; sample type:microbial mat; sample depth: 1m below water level, 4-5mm depth into the mat; Collection date: 13 Feb 2005; Collection time: about 2 pm; Ambient temperature: 15 C; pH: 6-9 (varies diurnally and through layers); Salinity of bulk water 90 ppt; Sulfate concentration of bulk water 80 mM The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The very short contigs (those shorter than 151 bp) have been removed.

Contigs
Download
GenBank:ABPT01.1.gbff.gz 5.2 Mb
FASTA:ABPT01.1.fsa_nt.gz 3.1 Mb
ASN.1:ABPT01.1.bbs.gz 2.8 Mb