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Sequence Set Browser


ABPM00000000.1 Maylandia zebra

# of Contigs: 87,341
# of Proteins: 0
# of Scaffolds/Chrs: 17,909
Total length: 76,983,152 bp
BioProject: PRJNA29483
BioSample: SAMN02743804
Keywords: WGS
Organism: Maylandia zebrashow lineagehide lineage
/isolation_source = wild sample individual from Mazinzi Reef, Lake Malawi, East Africa
/mol_type = genomic
/strain = Mazinzi Reef
/synonym = Metriaclima zebra
WGS: ABPM01000001:ABPM01087341
Scaffolds: EQ202275:EQ220183
17,909 scaffolds, total length is 26,080,815 bases
Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids : Genome Biol. 9 (7), R113 (2008) – show 6 authorshide authors
Loh,Y.H., Katz,L.S., Mims,M.C., Kocher,T.D., Yi,S.V., Streelman,J.T.
Submitted (04-JUN-2008) School of Biology, Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, 315 Ferst Drive, Atlanta, GA 30332, USA – show 7 authorshide authors
Streelman,J.T., Loh,Y.-H.E., Katz,L.S., Mims,M.C., Kocher,T.D., Yi,S., Cichlid Genome Consortium

The Maylandia zebra whole genome shotgun (WGS) project has the project accession ABPM00000000. This version of the project (01) has the accession number ABPM01000000, and consists of sequences ABPM01000001-ABPM01087341.

The library construction and sequencing work was performed by the Joint Genome Institute under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program and the by the University of California, Lawrence Livermore National Laboratory, Lawrence Berkeley National Laboratory and Los Alamos National Laboratory. This version of the project represents 0.17X coverage of the genome.

GenBank:ABPM01.1.gbff.gz 36.7 Mb
FASTA:ABPM01.1.fsa_nt.gz 23.9 Mb
ASN.1:ABPM01.1.bbs.gz 58.5 Mb
Minor Version Create Date
1 06/21/2008
5 11/11/2017
6 11/18/2017