skip to main content

Sequence Set Browser

 

ABPL00000000.1 Melanochromis auratus

Master
# of Contigs: 84,132
# of Proteins: 0
# of Scaffolds/Chrs: 16,843
Total length: 66,502,931 bp
BioProject: PRJNA29481
BioSample: SAMN02743803
Keywords: WGS
Annotation: Contigs
Organism: Melanochromis auratusshow lineagehide lineage
Biosource:
/isolation_source = wild sample individual from Domwe Island, Lake Malawi, East Africa
/mol_type = genomic
/strain = Domwe Island
WGS: ABPL01000001:ABPL01084132
Scaffolds: EQ185432:EQ202274
16,843 scaffolds, total length is 22,070,797 bases
Reference:
Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids : Genome Biol. 9 (7), R113 (2008) – show 6 authorshide authors
Loh,Y.H., Katz,L.S., Mims,M.C., Kocher,T.D., Yi,S.V., Streelman,J.T.
Submission:
Submitted (28-MAY-2008) School of Biology, Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, 315 Ferst Drive, Atlanta, GA 30332, USA – show 7 authorshide authors
Streelman,J.T., Loh,Y.-H.E., Katz,L.S., Mims,M.C., Kocher,T.D., Yi,S., Cichlid Genome Consortium

The Melanochromis auratus whole genome shotgun (WGS) project has the project accession ABPL00000000. This version of the project (01) has the accession number ABPL01000000, and consists of sequences ABPL01000001-ABPL01084132.

The library construction and sequencing work was performed by the Joint Genome Institute under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program and the by the University of California, Lawrence Livermore National Laboratory, Lawrence Berkeley National Laboratory and Los Alamos National Laboratory. This version of the project represents 0.12X coverage of the genome.

Contigs
Download
GenBank:ABPL01.1.gbff.gz 31.9 Mb
FASTA:ABPL01.1.fsa_nt.gz 20.7 Mb
ASN.1:ABPL01.1.bbs.gz 54.6 Mb