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Sequence Set Browser

 

ABNP00000000.1 coral metagenome

Master
# of Contigs: 34,433
# of Proteins: 0
Total length: 3,689,613 bp
BioProject: PRJNA28425
BioSample: SAMN00000165
Keywords: WGS
Organism: coral metagenomeshow lineagehide lineage
Biosource:
/clone_lib = NutPorCompHawVir0206
/environmental_sample
/isolation_source = viral fraction from whole Porites compressa tissue extracts taken from a nutrient stressor experiment that consisted of 5 liters of ambient seawater with additional 10 mM excess of each: nitrate (Ca(NO3)2), nitrite (NaNO2), ammonium (NH4Cl), and phosphate (KH2PO4) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours
/lat_lon = 21.434025 N 157.787827 W
/metagenomic
/mol_type = genomic genomic
/note = collected 02/23/2006-02/25/2006
WGS: ABNP01000001:ABNP01034433
Reference:
Functional metagenomic profiling of nine biomes : Nature 452 (7187), 629-632 (2008) – show 25 authorshide authors
Dinsdale,E.A., Edwards,R.A., Hall,D., Angly,F., Breitbart,M., Brulc,J.M., Furlan,M., Desnues,C., Haynes,M., Li,L., McDaniel,L., Moran,M.A., Nelson,K.E., Nilsson,C., Olson,R., Paul,J., Brito,B.R., Ruan,Y., Swan,B.K., Stevens,R., Valentine,D.L., Thurber,R.V., Wegley,L., White,B.A., Rohwer,F.
Reference:
Metagenomic Analysis Indicates that Stressors Induce Production of Herpes-like Viruses in the Coral Porites compressa : Unpublished – show 11 authorshide authors
Vega Thurber,R., Barott,K., Hall,D., Liu,H., Rodriguez-Brito,B., Desnues,C., Edwards,R., Haynes,M., Angly,F., Wegley,L., Rohwer,F.
Reference:
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa : Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18413-18418 (2008) – show 11 authorshide authors
Vega Thurber,R.L., Barott,K.L., Hall,D., Liu,H., Rodriguez-Mueller,B., Desnues,C., Edwards,R.A., Haynes,M., Angly,F.E., Wegley,L., Rohwer,F.L.
Submission:
Submitted (04-APR-2008) SDSU Center for Universal Microbial Sequencing, 5500 Campanile Dr., San Diego, CA 92182, USA – Edwards,R.A., Rohwer,F., Angly,F.

The coral metagenome whole genome shotgun (WGS) project has the project accession ABNP00000000. This version of the project (01) has the accession number ABNP01000000, and consists of sequences ABNP01000001-ABNP01034433.

Contigs
Download
GenBank:ABNP01.1.gbff.gz 2.8 Mb
FASTA:ABNP01.1.fsa_nt.gz 1.2 Mb
ASN.1:ABNP01.1.bbs.gz 1.5 Mb