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Sequence Set Browser


ABNP00000000.1 coral metagenome

# of Contigs: 34,433
# of Proteins: 0
Total length: 3,689,613 bp
BioProject: PRJNA28425
BioSample: SAMN00000165
Keywords: WGS
Organism: coral metagenomeshow lineagehide lineage
/clone_lib = NutPorCompHawVir0206
/isolation_source = viral fraction from whole Porites compressa tissue extracts taken from a nutrient stressor experiment that consisted of 5 liters of ambient seawater with additional 10 mM excess of each: nitrate (Ca(NO3)2), nitrite (NaNO2), ammonium (NH4Cl), and phosphate (KH2PO4) that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours
/lat_lon = 21.434025 N 157.787827 W
/mol_type = genomic genomic
/note = collected 02/23/2006-02/25/2006
WGS: ABNP01000001:ABNP01034433
Functional metagenomic profiling of nine biomes : Nature 452 (7187), 629-632 (2008) – show 25 authorshide authors
Dinsdale,E.A., Edwards,R.A., Hall,D., Angly,F., Breitbart,M., Brulc,J.M., Furlan,M., Desnues,C., Haynes,M., Li,L., McDaniel,L., Moran,M.A., Nelson,K.E., Nilsson,C., Olson,R., Paul,J., Brito,B.R., Ruan,Y., Swan,B.K., Stevens,R., Valentine,D.L., Thurber,R.V., Wegley,L., White,B.A., Rohwer,F.
Metagenomic Analysis Indicates that Stressors Induce Production of Herpes-like Viruses in the Coral Porites compressa : Unpublished – show 11 authorshide authors
Vega Thurber,R., Barott,K., Hall,D., Liu,H., Rodriguez-Brito,B., Desnues,C., Edwards,R., Haynes,M., Angly,F., Wegley,L., Rohwer,F.
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa : Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18413-18418 (2008) – show 11 authorshide authors
Vega Thurber,R.L., Barott,K.L., Hall,D., Liu,H., Rodriguez-Mueller,B., Desnues,C., Edwards,R.A., Haynes,M., Angly,F.E., Wegley,L., Rohwer,F.L.
Submitted (04-APR-2008) SDSU Center for Universal Microbial Sequencing, 5500 Campanile Dr., San Diego, CA 92182, USA – Edwards,R.A., Rohwer,F., Angly,F.

The coral metagenome whole genome shotgun (WGS) project has the project accession ABNP00000000. This version of the project (01) has the accession number ABNP01000000, and consists of sequences ABNP01000001-ABNP01034433.

GenBank:ABNP01.1.gbff.gz 3 Mb
FASTA:ABNP01.1.fsa_nt.gz 1.3 Mb
ASN.1:ABNP01.1.bbs.gz 1.5 Mb
Minor Version Create Date
1 04/24/2008
5 11/11/2017
6 11/18/2017