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Sequence Set Browser


ABNL00000000.1 coral metagenome

# of Contigs: 39,340
# of Proteins: 0
Total length: 4,078,686 bp
BioProject: PRJNA28417
BioSample: SAMN00000161
Keywords: WGS
Organism: coral metagenomeshow lineagehide lineage
/clone_lib = ConPorCompHawVir0206
/isolation_source = viral fraction from whole Porites compressa tissue extracts taken from an aquarium control experiment that consisted of 5 liters of ambient seawater that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours
/lat_lon = 21.434025 N 157.787827 W
/mol_type = genomic genomic
/note = collected 02/23/2006-02/25/2006
WGS: ABNL01000001:ABNL01039340
Functional metagenomic profiling of nine biomes : Nature 452 (7187), 629-632 (2008) – show 25 authorshide authors
Dinsdale,E.A., Edwards,R.A., Hall,D., Angly,F., Breitbart,M., Brulc,J.M., Furlan,M., Desnues,C., Haynes,M., Li,L., McDaniel,L., Moran,M.A., Nelson,K.E., Nilsson,C., Olson,R., Paul,J., Brito,B.R., Ruan,Y., Swan,B.K., Stevens,R., Valentine,D.L., Thurber,R.V., Wegley,L., White,B.A., Rohwer,F.
Metagenomic Analysis Indicates that Stressors Induce Production of Herpes-like Viruses in the Coral Porites compressa : Unpublished – show 11 authorshide authors
Vega Thurber,R., Barott,K., Hall,D., Liu,H., Rodriguez-Brito,B., Desnues,C., Edwards,R., Haynes,M., Angly,F., Wegley,L., Rohwer,F.
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa : Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18413-18418 (2008) – show 11 authorshide authors
Vega Thurber,R.L., Barott,K.L., Hall,D., Liu,H., Rodriguez-Mueller,B., Desnues,C., Edwards,R.A., Haynes,M., Angly,F.E., Wegley,L., Rohwer,F.L.
Submitted (04-APR-2008) SDSU Center for Universal Microbial Sequencing, 5500 Campanile Dr., San Diego, CA 92182, USA – Edwards,R.A., Rohwer,F., Angly,F.

The coral metagenome whole genome shotgun (WGS) project has the project accession ABNL00000000. This version of the project (01) has the accession number ABNL01000000, and consists of sequences ABNL01000001-ABNL01039340.

GenBank:ABNL01.1.gbff.gz 3.2 Mb
FASTA:ABNL01.1.fsa_nt.gz 1.4 Mb
ASN.1:ABNL01.1.bbs.gz 1.7 Mb