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Sequence Set Browser

 

ABNK00000000.1 coral metagenome

Master
# of Contigs: 39,270
# of Proteins: 0
Total length: 3,977,120 bp
BioProject: PRJNA28415
BioSample: SAMN00000160
Keywords: WGS
Organism: coral metagenomeshow lineagehide lineage
Biosource:
/clone_lib = T0PortComHawVir022306
/collection_date = 23-Feb-2006
/environmental_sample
/isolation_source = viral fraction from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef Corals collected 3 meters apart and at 3 meters depth and rinsed extensively in filtered autoclaved seawater before processing
/lat_lon = 21.434025 N 157.787827 W
/metagenomic
/mol_type = genomic genomic
WGS: ABNK01000001:ABNK01039270
Reference:
Functional metagenomic profiling of nine biomes : Nature 452 (7187), 629-632 (2008) – show 25 authorshide authors
Dinsdale,E.A., Edwards,R.A., Hall,D., Angly,F., Breitbart,M., Brulc,J.M., Furlan,M., Desnues,C., Haynes,M., Li,L., McDaniel,L., Moran,M.A., Nelson,K.E., Nilsson,C., Olson,R., Paul,J., Brito,B.R., Ruan,Y., Swan,B.K., Stevens,R., Valentine,D.L., Thurber,R.V., Wegley,L., White,B.A., Rohwer,F.
Reference:
Metagenomic Analysis Indicates that Stressors Induce Production of Herpes-like Viruses in the Coral Porites compressa : Unpublished – show 11 authorshide authors
Vega Thurber,R., Barott,K., Hall,D., Liu,H., Rodriguez-Brito,B., Desnues,C., Edwards,R., Haynes,M., Angly,F., Wegley,L., Rohwer,F.
Reference:
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa : Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18413-18418 (2008) – show 11 authorshide authors
Vega Thurber,R.L., Barott,K.L., Hall,D., Liu,H., Rodriguez-Mueller,B., Desnues,C., Edwards,R.A., Haynes,M., Angly,F.E., Wegley,L., Rohwer,F.L.
Submission:
Submitted (04-APR-2008) SDSU Center for Universal Microbial Sequencing, 5500 Campanile Dr., San Diego, CA 92182, USA – Edwards,R.A., Rohwer,F., Angly,F.

The coral metagenome whole genome shotgun (WGS) project has the project accession ABNK00000000. This version of the project (01) has the accession number ABNK01000000, and consists of sequences ABNK01000001-ABNK01039270.

Contigs
Download
GenBank:ABNK01.1.gbff.gz 3.1 Mb
FASTA:ABNK01.1.fsa_nt.gz 1.3 Mb
ASN.1:ABNK01.1.bbs.gz 1.6 Mb