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Sequence Set Browser


ABNK00000000.1 coral metagenome

# of Contigs: 39,270
# of Proteins: 0
Total length: 3,977,120 bp
BioProject: PRJNA28415
BioSample: SAMN00000160
Keywords: WGS
Organism: coral metagenomeshow lineagehide lineage
/clone_lib = T0PortComHawVir022306
/collection_date = 23-Feb-2006
/isolation_source = viral fraction from whole Porites compressa tissue extracts taken directly off the reef at the Hawai'i Marine Laboratory Refuge Point Reef Corals collected 3 meters apart and at 3 meters depth and rinsed extensively in filtered autoclaved seawater before processing
/lat_lon = 21.434025 N 157.787827 W
/mol_type = genomic genomic
WGS: ABNK01000001:ABNK01039270
Functional metagenomic profiling of nine biomes : Nature 452 (7187), 629-632 (2008) – show 25 authorshide authors
Dinsdale,E.A., Edwards,R.A., Hall,D., Angly,F., Breitbart,M., Brulc,J.M., Furlan,M., Desnues,C., Haynes,M., Li,L., McDaniel,L., Moran,M.A., Nelson,K.E., Nilsson,C., Olson,R., Paul,J., Brito,B.R., Ruan,Y., Swan,B.K., Stevens,R., Valentine,D.L., Thurber,R.V., Wegley,L., White,B.A., Rohwer,F.
Metagenomic Analysis Indicates that Stressors Induce Production of Herpes-like Viruses in the Coral Porites compressa : Unpublished – show 11 authorshide authors
Vega Thurber,R., Barott,K., Hall,D., Liu,H., Rodriguez-Brito,B., Desnues,C., Edwards,R., Haynes,M., Angly,F., Wegley,L., Rohwer,F.
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa : Proc. Natl. Acad. Sci. U.S.A. 105 (47), 18413-18418 (2008) – show 11 authorshide authors
Vega Thurber,R.L., Barott,K.L., Hall,D., Liu,H., Rodriguez-Mueller,B., Desnues,C., Edwards,R.A., Haynes,M., Angly,F.E., Wegley,L., Rohwer,F.L.
Submitted (04-APR-2008) SDSU Center for Universal Microbial Sequencing, 5500 Campanile Dr., San Diego, CA 92182, USA – Edwards,R.A., Rohwer,F., Angly,F.

The coral metagenome whole genome shotgun (WGS) project has the project accession ABNK00000000. This version of the project (01) has the accession number ABNK01000000, and consists of sequences ABNK01000001-ABNK01039270.

GenBank:ABNK01.1.gbff.gz 3.1 Mb
FASTA:ABNK01.1.fsa_nt.gz 1.3 Mb
ASN.1:ABNK01.1.bbs.gz 1.6 Mb