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Sequence Set Browser

 

ABNF00000000.1 freshwater metagenome

Master
# of Contigs: 63,978
# of Proteins: 0
Total length: 6,481,595 bp
BioProject: PRJNA28405
BioSample: SAMN00000156
Keywords: WGS
Organism: freshwater metagenomeshow lineagehide lineage
Biosource:
/clone_lib = TilPondKentSTMic050406
/collection_date = 04-May-2006
/environmental_sample
/isolation_source = microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
/lat_lon = 33.537594 N 116.097748 W
/metagenomic
/mol_type = genomic genomic
WGS: ABNF01000001:ABNF01063978
Reference:
Functional metagenomic profiling of nine biomes : Nature 452 (7187), 629-632 (2008) – show 25 authorshide authors
Dinsdale,E.A., Edwards,R.A., Hall,D., Angly,F., Breitbart,M., Brulc,J.M., Furlan,M., Desnues,C., Haynes,M., Li,L., McDaniel,L., Moran,M.A., Nelson,K.E., Nilsson,C., Olson,R., Paul,J., Brito,B.R., Ruan,Y., Swan,B.K., Stevens,R., Valentine,D.L., Thurber,R.V., Wegley,L., White,B.A., Rohwer,F.
Reference:
Dynamics of the viral and microbial community in a freshwater aquaculture system : Unpublished – show 11 authorshide authors
Li,L., Desnues,C., Rayhawk,S., Rodriguez-Brito,B., Liu,H., Angly,F., Felts,B., Edwards,R.A., Haynes,M., Buchanan,J.T., Rohwer,F.
Submission:
Submitted (04-APR-2008) SDSU Center for Universal Microbial Sequencing, 5500 Campanile Dr., San Diego, CA 92182, USA – Edwards,R.A., Rohwer,F., Angly,F.

The freshwater metagenome whole genome shotgun (WGS) project has the project accession ABNF00000000. This version of the project (01) has the accession number ABNF01000000, and consists of sequences ABNF01000001-ABNF01063978.

Contigs
Download
GenBank:ABNF01.1.gbff.gz 5.1 Mb
FASTA:ABNF01.1.fsa_nt.gz 2.6 Mb
ASN.1:ABNF01.1.bbs.gz 2.8 Mb
History
Minor Version Create Date
1 04/24/2008
5 11/11/2017
6 11/18/2017