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Sequence Set Browser

 

ABKP00000000.2 Anopheles coluzzii

Master
# of Contigs: 27,063
# of Proteins: 0
# of Scaffolds/Chrs: 10,521
Total length: 209,529,067 bp
BioProject: PRJNA20295
BioSample: SAMN02953721
Keywords: WGS
Organism: Anopheles coluzziishow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = M
WGS: ABKP02000001:ABKP02027063
Scaffolds: EQ087210:EQ097730
10,521 scaffolds, total length is 224,417,174 bases
Reference:
Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences : Science 330 (6003), 512-514 (2010) – show 30 authorshide authors
Lawniczak,M.K., Emrich,S.J., Holloway,A.K., Regier,A.P., Olson,M., White,B., Redmond,S., Fulton,L., Appelbaum,E., Godfrey,J., Farmer,C., Chinwalla,A., Yang,S.P., Minx,P., Nelson,J., Kyung,K., Walenz,B.P., Garcia-Hernandez,E., Aguiar,M., Viswanathan,L.D., Rogers,Y.H., Strausberg,R.L., Saski,C.A., Lawson,D., Collins,F.H., Kafatos,F.C., Christophides,G.K., Clifton,S.W., Kirkness,E.F., Besansky,N.J.
Submission:
Submitted (22-FEB-2008) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – Kirkness,E., Walenz,B., Strausberg,R.
Submission:
Submitted (03-MAR-2008) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – Kirkness,E., Walenz,B., Strausberg,R.

On Mar 17, 2008 this sequence version replaced gi:168637602.

The Anopheles coluzzii whole genome shotgun (WGS) project has the project accession ABKP00000000. This version of the project (02) has the accession number ABKP02000000, and consists of sequences ABKP02000001-ABKP02027063.

Source of sequence data: Washington University Genome Sequencing Center. Source of DNA used for sequencing: Nora Besansky, University of Notre Dame, Notre Dame IN 46556-0369. The DNA was purified from the Anopheles gambiae Mali-NIH colony, available through MR4. Collected in a village near Niono, Mali in June 2005. Established by combining ca. 80 isofemale families that were molecularly identified as A.gambiae M molecular form and karyotyped as 2Rbc/bc; 2La/a. DNA source for plasmid library was adult males; for fosmid and BAC libraries it was pupae of mixed sexes. Total sequence traces comprise 94% plasmid reads (5-6kb inserts), 4% fosmid reads (40kb inserts), and 2% BAC ends (120 kb inserts). The ABKP01000000 version of this project included low-coverage degenerates from the many minor variant haplotypes in the sequenced population. Those low-coverage degenerates were excluded from this version of the project, ABKP02000000. Long-term curation of the sequence and subsequent annotation updates is the responsibility of VectorBase at http://www.vectorbase.org. This version of the assembly, m5, represents 8x coverage of the genome.

Contigs
Download
GenBank:ABKP02.1.gbff.gz 92 Mb
FASTA:ABKP02.1.fsa_nt.gz 62.3 Mb
ASN.1:ABKP02.1.bbs.gz 50.2 Mb