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ABKP00000000.2 Anopheles coluzzii
# of Contigs: 27,063 # of Proteins: 0 # of Scaffolds/Chrs: 10,521 Total length: 209,529,067 bp BioProject: PRJNA20295 BioSample: SAMN02953721 Keywords: WGS Organism: Anopheles coluzzii – show lineagehide lineage Biosource:/mol_type = genomic/strain = M WGS: ABKP02000001:ABKP02027063 Scaffolds: EQ087210:EQ09773010,521 scaffolds, total length is 224,417,174 bases Reference:Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences : Science 330 (6003), 512-514 (2010) – show 30 authorshide authorsLawniczak,M.K., Emrich,S.J., Holloway,A.K., Regier,A.P., Olson,M., White,B., Redmond,S., Fulton,L., Appelbaum,E., Godfrey,J., Farmer,C., Chinwalla,A., Yang,S.P., Minx,P., Nelson,J., Kyung,K., Walenz,B.P., Garcia-Hernandez,E., Aguiar,M., Viswanathan,L.D., Rogers,Y.H., Strausberg,R.L., Saski,C.A., Lawson,D., Collins,F.H., Kafatos,F.C., Christophides,G.K., Clifton,S.W., Kirkness,E.F., Besansky,N.J. Submission:Submitted (22-FEB-2008) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – Kirkness,E., Walenz,B., Strausberg,R. Submission:Submitted (03-MAR-2008) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – Kirkness,E., Walenz,B., Strausberg,R.
On Mar 17, 2008 this sequence version replaced gi:168637602.
The Anopheles coluzzii whole genome shotgun (WGS) project has the project accession ABKP00000000. This version of the project (02) has the accession number ABKP02000000, and consists of sequences ABKP02000001-ABKP02027063.
Source of sequence data: Washington University Genome Sequencing Center. Source of DNA used for sequencing: Nora Besansky, University of Notre Dame, Notre Dame IN 46556-0369. The DNA was purified from the Anopheles gambiae Mali-NIH colony, available through MR4. Collected in a village near Niono, Mali in June 2005. Established by combining ca. 80 isofemale families that were molecularly identified as A.gambiae M molecular form and karyotyped as 2Rbc/bc; 2La/a. DNA source for plasmid library was adult males; for fosmid and BAC libraries it was pupae of mixed sexes. Total sequence traces comprise 94% plasmid reads (5-6kb inserts), 4% fosmid reads (40kb inserts), and 2% BAC ends (120 kb inserts). The ABKP01000000 version of this project included low-coverage degenerates from the many minor variant haplotypes in the sequenced population. Those low-coverage degenerates were excluded from this version of the project, ABKP02000000. Long-term curation of the sequence and subsequent annotation updates is the responsibility of VectorBase at http://www.vectorbase.org. This version of the assembly, m5, represents 8x coverage of the genome.