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Sequence Set Browser

 

ABKK00000000.2 Clostridioides difficile CIP 107932

Master
# of Contigs: 55
# of Proteins: 0
# of Scaffolds/Chrs: 1
Total length: 4,032,580 bp
BioProject: PRJNA28561
BioSample: SAMN02470535
Keywords: WGS
Organism: Clostridioides difficile CIP 107932show lineagehide lineage
Biosource:
/country = France: Marne, Reims
/host = Homo sapiens
/isolation_source = 28 year old female with pseudomembranous colitis
/mol_type = genomic
/note = standard reference strain for binary toxin from CIP
/strain = CIP 107932
WGS: ABKK02000001:ABKK02000055
Scaffolds: CM000659:CM000659
1 scaffold, total length is 4,016,699 bases
Reference:
Comparative genomics of Clostridium difficile (Genome Quebec/Genome Canada) : Unpublished – show 13 authorshide authors
Hernandez,C., Pinsonnault,C., Leveque,G., Marquis,P., Nagy,C., Dias,J., Villeneuve,A., Blanchette,R., Brukner,I., Oughton,M., Forgetta,V., Dascal,A., Dewar,K.
Submission:
Submitted (23-JAN-2008) McGill University and Genome Quebec Innovation Centre, 740 Avenue Docteur Penfield, Montreal, Quebec H3A 1A4, Canada – show 9 authorshide authors
Leveque,G., Nagy,C., Dias,J., Villeneuve,A., Brukner,I., Oughton,M., Forgetta,V., Dascal,A., Dewar,K.
Submission:
Submitted (12-DEC-2008) McGill University and Genome Quebec Innovation Centre, 740 Avenue Docteur Penfield, Montreal, Quebec H3A 1A4, Canada – show 13 authorshide authors
Hernandez,C., Pinsonnault,C., Leveque,G., Marquis,P., Nagy,C., Dias,J., Villeneuve,A., Blanchette,R., Brukner,I., Oughton,M., Forgetta,V., Dascal,A., Dewar,K.

On Jan 6, 2009 this sequence version replaced gi:167678619.

The Clostridioides difficile CIP 107932 whole genome shotgun (WGS) project has the project accession ABKK00000000. This version of the project (02) has the accession number ABKK02000000, and consists of sequences ABKK02000001-ABKK02000055.

The whole genome shotgun sequence was generated by the McGill University and Genome Quebec Innovation Centre using the GS De NovoAssembler with GS-FLX reads. Gap closure was performed using PCR and traditional sequencing. Contigs numbered 1 to 41 are ordered and oriented according to the complete genome of Clostridium difficile 630 (AM180355). Contigs numbered 42 to 55 cannot be placed with certainty and are ordered by increasing size. This strain is available from Dr. A. Dascal, Jewish General Hospital, Room G142, Montreal, Quebec, Canada H3T 1E2. Assembly name: cdeaa Genome coverage: 28x.

Contigs
Download
GenBank:ABKK02.1.gbff.gz 1.6 Mb
FASTA:ABKK02.1.fsa_nt.gz 1.2 Mb
ASN.1:ABKK02.1.bbs.gz 923 kb