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Sequence Set Browser

 

ABJO00000000.1 Helicobacter pylori HPKX_438_AG0C1

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# of Contigs: 2,602
# of Proteins: 0
Total length: 1,819,663 bp
BioProject: PRJNA28543
BioSample: SAMN00000754
Keywords: WGS
Organism: Helicobacter pylori HPKX_438_AG0C1show lineagehide lineage
Biosource:
/isolation_source = patient with Helicobactor pylori-associated atrophic gastritis who later progressed to gastric carcinoma
/mol_type = genomic
/strain = HPKX_438_AG0C1
WGS: ABJO01000001:ABJO01002602
Reference:
Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells : Proc. Natl. Acad. Sci. U.S.A. 105 (11), 4358-4363 (2008) – Giannakis,M., Chen,S.L., Karam,S.M., Engstrand,L., Gordon,J.I.
Submission:
Submitted (25-JAN-2008) Center for Genome Sciences, Washington University School of Medicine, 4444 Forest Park Avenue, St. Louis, MO 63108, USA – Giannakis,M., Chen,S.L., Karam,S.M., Engstrand,L., Gordon,J.I.

The Helicobacter pylori HPKX_438_AG0C1 whole genome shotgun (WGS) project has the project accession ABJO00000000. This version of the project (01) has the accession number ABJO01000000, and consists of sequences ABJO01000001-ABJO01002602.

DNA Source: Jeffrey Gordon, Center for Genome Sciences, Washington University School of Medicine ABJO00000000 and ABJP00000000 were isolated from the same individual. ABJO00000000 was isolated when the patient had Helicobacter pylori-associated chronic atrophic gastritis. ABJP00000000 was isolated 4 years later, after the patient had developed gastric adenocarcinoma. This assembly represents 25x coverage of the genome.

Contigs
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GenBank:ABJO01.1.gbff.gz 850.5 kb
FASTA:ABJO01.1.fsa_nt.gz 570.3 kb
ASN.1:ABJO01.1.bbs.gz 484 kb