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ABJO00000000.1 Helicobacter pylori HPKX_438_AG0C1
# of Contigs: 2,602 # of Proteins: 0 Total length: 1,819,663 bp BioProject: PRJNA28543 BioSample: SAMN00000754 Keywords: WGS Organism: Helicobacter pylori HPKX_438_AG0C1 – show lineagehide lineage Biosource:/isolation_source = patient with Helicobactor pylori-associated atrophic gastritis who later progressed to gastric carcinoma/mol_type = genomic/strain = HPKX_438_AG0C1 WGS: ABJO01000001:ABJO01002602 Reference:Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells : Proc. Natl. Acad. Sci. U.S.A. 105 (11), 4358-4363 (2008) – Giannakis,M., Chen,S.L., Karam,S.M., Engstrand,L., Gordon,J.I. Submission:Submitted (25-JAN-2008) Center for Genome Sciences, Washington University School of Medicine, 4444 Forest Park Avenue, St. Louis, MO 63108, USA – Giannakis,M., Chen,S.L., Karam,S.M., Engstrand,L., Gordon,J.I.
The Helicobacter pylori HPKX_438_AG0C1 whole genome shotgun (WGS) project has the project accession ABJO00000000. This version of the project (01) has the accession number ABJO01000000, and consists of sequences ABJO01000001-ABJO01002602.
DNA Source: Jeffrey Gordon, Center for Genome Sciences, Washington University School of Medicine ABJO00000000 and ABJP00000000 were isolated from the same individual. ABJO00000000 was isolated when the patient had Helicobacter pylori-associated chronic atrophic gastritis. ABJP00000000 was isolated 4 years later, after the patient had developed gastric adenocarcinoma. This assembly represents 25x coverage of the genome.