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Sequence Set Browser

 

ABHD00000000.2 Clostridioides difficile QCD-63q42

Master
# of Contigs: 60
# of Proteins: 0
# of Scaffolds/Chrs: 1
Total length: 4,440,437 bp
BioProject: PRJNA21103
BioSample: SAMN02470541
Keywords: WGS
Organism: Clostridioides difficile QCD-63q42show lineagehide lineage
Biosource:
/collection_date = 2005
/country = Canada: Quebec, Quebec City
/host = Homo sapiens
/isolate = QCD-63q42
/isolation_source = 67 year old male patient with severe CDAD in 2005
/mol_type = genomic
WGS: ABHD02000001:ABHD02000060
Scaffolds: CM000637:CM000637
1 scaffold, total length is 4,129,288 bases
Reference:
Comparative genomics of Clostridium difficile (Genome Quebec/Genome Canada) : Unpublished – show 17 authorshide authors
Villeneuve,A., Hernandez,C., Pinsonnault,C., Leveque,G., Marquis,P., Nagy,C., Dias,J., Blanchette,R., Brukner,I., Oughton,M., Forgetta,V., Markovic,C., Nelson,J., Mardis,E., Lorange,M., Dascal,A., Dewar,K.
Submission:
Submitted (31-OCT-2007) McGill University and Genome Quebec Innovation Centre, 740 Avenue Docteur Penfield, Montreal, Quebec H3A 1A4, Canada – show 12 authorshide authors
Villeneuve,A., Leveque,G., Nagy,C., Dias,J., Brukner,I., Oughton,M., Forgetta,V., Markovic,C., Nelson,J., Mardis,E., Dascal,A., Dewar,K.
Submission:
Submitted (15-DEC-2008) McGill University and Genome Quebec Innovation Centre, 740 Avenue Docteur Penfield, Montreal, Quebec H3A 1A4, Canada – show 17 authorshide authors
Villeneuve,A., Hernandez,C., Pinsonnault,C., Leveque,G., Marquis,P., Nagy,C., Dias,J., Blanchette,R., Brukner,I., Oughton,M., Forgetta,V., Markovic,C., Nelson,J., Mardis,E., Lorange,M., Dascal,A., Dewar,K.

On Jan 7, 2009 this sequence version replaced gi:159143163.

The Clostridioides difficile QCD-63q42 whole genome shotgun (WGS) project has the project accession ABHD00000000. This version of the project (02) has the accession number ABHD02000000, and consists of sequences ABHD02000001-ABHD02000060.

The whole genome shotgun sequence was generated by the McGill University and Genome Quebec Innovation Centre using the GS De NovoAssembler with GS-FLX reads. Gap closure was performed using PCR and traditional sequencing. Contigs numbered 1 to 33 are ordered and oriented according to the complete genome of Clostridium difficile 630 (AM180355). Contigs numbered 34 to 60 cannot be placed with certainty and are ordered by increasing size. This isolate is available from Dr. A. Dascal, Jewish General Hospital, Room G142, Montreal, Quebec, Canada H3T 1E2.

Contigs
Download
GenBank:ABHD02.1.gbff.gz 1.8 Mb
FASTA:ABHD02.1.fsa_nt.gz 1.3 Mb
ASN.1:ABHD02.1.bbs.gz 1010.9 kb