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Sequence Set Browser

 

ABFE00000000.1 Laccaria bicolor S238N-H82

Master
# of Contigs: 4,401
# of Proteins: 18,215
# of Scaffolds/Chrs: 665
Total length: 58,683,330 bp
BioProject: PRJNA19043
BioSample: SAMN02769624
Keywords: WGS
Annotation: Scaffolds
Organism: Laccaria bicolor S238N-H82show lineagehide lineage
Biosource:
/mol_type = genomic
/strain = S238N-H82
WGS: ABFE01000001:ABFE01004401
Scaffolds: DS547091:DS547755
665 scaffolds, 18,215 proteins, total length is 64,877,444 bases
Reference:
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis : Nature 452 (7183), 88-92 (2008) – show 68 authorshide authors
Martin,F., Aerts,A., Ahren,D., Brun,A., Danchin,E.G., Duchaussoy,F., Gibon,J., Kohler,A., Lindquist,E., Pereda,V., Salamov,A., Shapiro,H.J., Wuyts,J., Blaudez,D., Buee,M., Brokstein,P., Canback,B., Cohen,D., Courty,P.E., Coutinho,P.M., Delaruelle,C., Detter,J.C., Deveau,A., DiFazio,S., Duplessis,S., Fraissinet-Tachet,L., Lucic,E., Frey-Klett,P., Fourrey,C., Feussner,I., Gay,G., Grimwood,J., Hoegger,P.J., Jain,P., Kilaru,S., Labbe,J., Lin,Y.C., Legue,V., Le Tacon,F., Marmeisse,R., Melayah,D., Montanini,B., Muratet,M., Nehls,U., Niculita-Hirzel,H., Oudot-Le Secq,M.P., Peter,M., Quesneville,H., Rajashekar,B., Reich,M., Rouhier,N., Schmutz,J., Yin,T., Chalot,M., Henrissat,B., Kues,U., Lucas,S., Van de Peer,Y., Podila,G.K., Polle,A., Pukkila,P.J., Richardson,P.M., Rouze,P., Sanders,I.R., Stajich,J.E., Tunlid,A., Tuskan,G., Grigoriev,I.V.
Submission:
Submitted (19-NOV-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 44 authorshide authors
Zhou,K., Detter,J.C., Glavina del Rio,T., Dahlen,E., Tice,H., Pitluck,S., Aerts,A., Salamov,A., Shapiro,H.J., Lindquist,E., Lucas,S., Richardson,P.M., Ahren,D., Blaudez,D., Brun,A., Buee,M., Chalot,M., Courty,P., Coutinho,P.M., Deveau,A., Duplessis,S., Duchaussoy,F., Fourrey,C., Fraissinet-Tachet,L., Henrissat,B., Gay,G., Gibon,J., Hoegger,P., Kohler,A., Kues,U., Labbe,J., Muratet,M., Marmeisse,R., Melayah,D., Montanini,B., Napoli,C., Podila,G., Reich,M., Rouhier,N., Rouze,P., Wuyts,J., Martin,F., Grigoriev,I.V., US DOE Joint Genome Institute (JGI-PGF)

The Laccaria bicolor S238N-H82 whole genome shotgun (WGS) project has the project accession ABFE00000000. This version of the project (01) has the accession number ABFE01000000, and consists of sequences ABFE01000001-ABFE01004401.

URL -- http://www.jgi.doe.gov/Laccaria JGI Project ID: 3634485 Source DNA is available from Francis Martin (fmartin@nancy.inra.fr) Contacts: Francis Martin (fmartin@nancy.inra.fr) Igor Grigoriev (ivgrigoriev@lbl.gov) Annotation done by JGI-PGF and the Laccaria bicolor Consortium The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) This version of the project, V1.0, represents 9.9x coverage of the genome. Annotated scaffolds were added in January 2008.

Contigs
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GenBank:ABFE01.1.gbff.gz 25.3 Mb
FASTA:ABFE01.1.fsa_nt.gz 17.1 Mb
ASN.1:ABFE01.1.bbs.gz 14 Mb