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Sequence Set Browser

 

ABEP00000000.2 Branchiostoma floridae

Master
# of Contigs: 41,925
# of Proteins: 28,623
# of Scaffolds: 398
Total length: 480,405,935 bp
BioProject: PRJNA20249
BioSample: SAMN02953694
Keywords: WGS
Annotation: Scaffolds
Organism: Branchiostoma floridaeshow lineagehide lineage
Biosource:
/country = USA: Old Tampa Bay, Florida
/mol_type = genomic
/sex = male
/strain = S238N-H82
/tissue_type = testes
WGS: ABEP02000001:ABEP02041925
Scaffolds: GG666451:GG666848
398 scaffolds, 28,623 proteins, total length is 521,895,125 bases
Reference:
The amphioxus genome and the evolution of the chordate karyotype : Nature 453 (7198), 1064-1071 (2008) – show 37 authorshide authors
Putnam,N.H., Butts,T., Ferrier,D.E., Furlong,R.F., Hellsten,U., Kawashima,T., Robinson-Rechavi,M., Shoguchi,E., Terry,A., Yu,J.K., Benito-Gutierrez,E.L., Dubchak,I., Garcia-Fernandez,J., Gibson-Brown,J.J., Grigoriev,I.V., Horton,A.C., de Jong,P.J., Jurka,J., Kapitonov,V.V., Kohara,Y., Kuroki,Y., Lindquist,E., Lucas,S., Osoegawa,K., Pennacchio,L.A., Salamov,A.A., Satou,Y., Sauka-Spengler,T., Schmutz,J., Shin-I,T., Toyoda,A., Bronner-Fraser,M., Fujiyama,A., Holland,L.Z., Holland,P.W., Satoh,N., Rokhsar,D.S.
Submission:
Submitted (19-APR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 13 authorshide authors
Terry,A., Salamov,A., Zhou,K., Grigoriev,I., Pitluck,S., Lucas,S., Detter,J.C., Glavina del Rio,T., Shapiro,H., Lindquist,E., Putnam,N., Rokhsar,D., US DOE Joint Genome Institute (JGI-PGF)
Submission:
Submitted (01-MAY-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 13 authorshide authors
Terry,A., Salamov,A., Zhou,K., Grigoriev,I., Pitluck,S., Lucas,S., Detter,J.C., Glavina del Rio,T., Shapiro,H., Lindquist,E., Putnam,N., Rokhsar,D., US DOE Joint Genome Institute (JGI-PGF)

On Apr 30, 2009 this sequence version replaced gi:186567963.

The Branchiostoma floridae whole genome shotgun (WGS) project has the project accession ABEP00000000. This version of the project (02) has the accession number ABEP02000000, and consists of sequences ABEP02000001-ABEP02041925.

URL -- http://www.jgi.doe.gov/Brafl1 JGI Project ID: 3634047 Contacts: Nicholas H Putnam (nhputnam@lbl.gov) Daniel Rokhsar (DSRokhsar@lbl.gov) Nori Satoh (satoh@ascidian.zool.kyoto-u.ac.jp) The Florida lancelet Branchiostoma floridae is a representative of the invertebrate subphylum Cephalochordata. Lancelets, along with tunicates, are members of the chordate phylum, and share the same basic body plan as vertebrates. This includes a stiffening structural rod, or notochord, a dorsal hollow nerve tube, segmented muscle blocks and pharyngeal gill slits. However, they have a simpler anatomy and physiology than vertebrates, with fewer distinct tissue types and organs. Anatomical, embryological and molecular genetic comparisons between the lancelet and the vertebrates continue to shed light on the evolutionary origin of the vertebrates. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Assembly Name: Version 2.

Contigs
Download
GenBank:ABEP02.1.gbff.gz 212.6 Mb
FASTA:ABEP02.1.fsa_nt.gz 138.8 Mb
ASN.1:ABEP02.1.bbs.gz 112.6 Mb