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Sequence Set Browser


AAWZ00000000.2 Anolis carolinensis

# of Contigs: 41,986
# of Proteins: 0
# of Scaffolds: 2,156
Total length: 1,701,336,547 bp
BioProject: PRJNA18787
BioSample: SAMN02981230
Keywords: WGS
Annotation: Contigs
Organism: Anolis carolinensisshow lineagehide lineage
/country = USA
/mol_type = genomic
WGS: AAWZ02000001:AAWZ02041986
Scaffolds: CM000937:CM000949, GL342991:GL345133
2,156 scaffolds, total length is 2,813,844,789 bases
The genome of the green anole lizard and a comparative analysis with birds and mammals : Nature (2011) In press – show 50 authorshide authors
Alfoldi,J., Di Palma,F., Grabherr,M., Williams,C., Kong,L., Mauceli,E., Russell,P., Lowe,C.B., Glor,R.E., Jaffe,J.D., Ray,D.A., Boissinot,S., Shedlock,A.M., Botka,C., Castoe,T.A., Colbourne,J.K., Fujita,M.K., Moreno,R.G., Ten Hallers,B.F., Haussler,D., Heger,A., Heiman,D., Janes,D.E., Johnson,J., de Jong,P.J., Koriabine,M.Y., Lara,M., Novick,P.A., Organ,C.L., Peach,S.E., Poe,S., Pollock,D.D., de Queiroz,K., Sanger,T., Searle,S., Smith,J.D., Smith,Z., Swofford,R., Turner-Maier,J., Wade,J., Young,S., Zadissa,A., Edwards,S.V., Glenn,T.C., Schneider,C.J., Losos,J.B., Lander,E.S., Breen,M., Ponting,C.P., Lindblad-Toh,K.
Submitted (08-FEB-2007) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – DiPalma,F., Grabherr,M., Lander,E.S., Lindblad-Toh,K., The Genome Sequencing Platform, The Genome Assembly Team
Submitted (17-DEC-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 9 authorshide authors
Di Palma,F., Alfoldi,J., Heiman,D., Young,S., Grabherr,M., Johnson,J., Lander,E.S., Lindblad-Toh,K., The Genome Sequencing Platform

On Apr 15, 2010 this sequence version replaced gi:125802841.

The Anolis carolinensis whole genome shotgun (WGS) project has the project accession AAWZ00000000. This version of the project (02) has the accession number AAWZ02000000, and consists of sequences AAWZ02000001-AAWZ02041986.

The majority of the reads were generated from a female Anolis (JBL SC #1) provided by Jonathan Losos, Harvard University. In addition, BAC-end reads were generated from a BAC library derived from a male anole (ID #5) provided by Travis Glenn, University of Georgia. The mitochondrion is GenBank accession number EU747728.

Assembly Method : Arachne v. 3.0.0
Assembly Name : AnoCar2.0
Genome Coverage : 7.10x
Sequencing Technology : ABI