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Sequence Set Browser

 

AAWR00000000.2 Equus caballus

Master
# of Contigs: 55,316
# of Proteins: 0
# of Scaffolds: 1,570
Total length: 2,428,773,513 bp
BioProject: PRJNA18661
BioSample: SAMN02953672
Keywords: WGS
Annotation: Contigs
Organism: Equus caballusshow lineagehide lineage
Biosource:
/breed = thoroughbred
/isolate = Twilight
/mol_type = genomic
/sex = female
WGS: AAWR02000001:AAWR02055316
Scaffolds: CM000377:CM000408, DS497970:DS499507
1,570 scaffolds, total length is 2,436,538,809 bases
Reference:
Genome sequence, comparative analysis, and population genetics of the domestic horse : Science 326 (5954), 865-867 (2009) – show 60 authorshide authors
Wade,C.M., Giulotto,E., Sigurdsson,S., Zoli,M., Gnerre,S., Imsland,F., Lear,T.L., Adelson,D.L., Bailey,E., Bellone,R.R., Blocker,H., Distl,O., Edgar,R.C., Garber,M., Leeb,T., Mauceli,E., MacLeod,J.N., Penedo,M.C., Raison,J.M., Sharpe,T., Vogel,J., Andersson,L., Antczak,D.F., Biagi,T., Binns,M.M., Chowdhary,B.P., Coleman,S.J., Della Valle,G., Fryc,S., Guerin,G., Hasegawa,T., Hill,E.W., Jurka,J., Kiialainen,A., Lindgren,G., Liu,J., Magnani,E., Mickelson,J.R., Murray,J., Nergadze,S.G., Onofrio,R., Pedroni,S., Piras,M.F., Raudsepp,T., Rocchi,M., Roed,K.H., Ryder,O.A., Searle,S., Skow,L., Swinburne,J.E., Syvanen,A.C., Tozaki,T., Valberg,S.J., Vaudin,M., White,J.R., Zody,M.C., Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team, Lander,E.S., Lindblad-Toh,K.
Submission:
Submitted (18-JAN-2007) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 8 authorshide authors
Lindblad-Toh,K., Gnerre,S., Wade,C.M., Bloecker,H., Leeb,T., Distl,O., Lander,E.S., The Genome Sequencing Platform, The Genome Assembly Team
Submission:
Submitted (06-SEP-2007) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 6 authorshide authors
Lindblad-Toh,K., Wade,C.M., Di Palma,F., Gnerre,S., Lander,E.S., The Genome Sequencing Platform, The Genome Assembly Team

On Sep 24, 2007 this sequence version replaced gi:124106287.

The Equus caballus whole genome shotgun (WGS) project has the project accession AAWR00000000. This version of the project (02) has the accession number AAWR02000000, and consists of sequences AAWR02000001-AAWR02055316.

This version of the project represents approximately 6.8x coverage of the genome. This assembly of the horse genome is EquCab2.0. It is an assembly of contigs AAWR02000001-AAWR02055316 into chromosomes CM000377-CM000408 and unlinked multi-component scaffolds DS497970-DS499507.

Contigs
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