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Sequence Set Browser


AAUB00000000.1 Yersinia pestis FV-1

# of Contigs: 400
# of Proteins: 0
Total length: 4,472,646 bp
BioProject: PRJNA16429
BioSample: SAMN02404406
Keywords: WGS
Annotation: Contigs
Organism: Yersinia pestis FV-1show lineagehide lineage
/collection_date = 2001
/country = USA: near Flagstaff, AZ
/isolation_source = plague epizootic in a Gunnison's prairie dog colony
/mol_type = genomic
/strain = FV-1
WGS: AAUB01000001:AAUB01000400
A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis : PLoS ONE 2 (2), E220 (2007) – show 14 authorshide authors
Touchman,J.W., Wagner,D.M., Hao,J., Mastrian,S.D., Shah,M.K., Vogler,A.J., Allender,C.J., Clark,E.A., Benitez,D.S., Youngkin,D.J., Girard,J.M., Auerbach,R.K., Beckstrom-Sternberg,S.M., Keim,P.
Submitted (03-OCT-2006) Pathogen Genomics Division, Translational Genomics Research Institute, 445 N. Fifth Street, Phoenix, AZ 85004, USA – Touchman,J.W.

The Yersinia pestis FV-1 whole genome shotgun (WGS) project has the project accession AAUB00000000. This version of the project (01) has the accession number AAUB01000000, and consists of sequences AAUB01000001-AAUB01000400.

Source DNA and bacteria available from Dr. Paul Keim ( Department of Biology, Northern Arizona University, Flagstaff, AZ. This version of the project represents approximately 11x coverage of the genome.

GenBank:AAUB01.1.gbff.gz 1.9 Mb
FASTA:AAUB01.1.fsa_nt.gz 1.3 Mb
ASN.1:AAUB01.1.bbs.gz 1.3 Mb