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Sequence Set Browser

 

AATO00000000.1 bioreactor sludge metagenome

Master
# of Contigs: 15,866
# of Proteins: 0
Total length: 25,312,906 bp
BioProject: PRJNA17657
BioSample: SAMN02954268
Keywords: WGS
Organism: bioreactor sludge metagenomeshow lineagehide lineage
Biosource:
/country = USA: Madison, Wisconsin
/environmental_sample
/isolation_source = Enhanced Biological Phosphorus Removal (EBPR) bioreactor sludge
/metagenomic
/mol_type = genomic
WGS: AATO01000001:AATO01015866
Reference:
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities : Nat. Biotechnol. (2006) In press – show 19 authorshide authors
Martin,H.G., Ivanova,N., Kunin,V., Warnecke,F., Barry,K.W., McHardy,A.C., Yeates,C., He,S., Salamov,A.A., Szeto,E., Dalin,E., Putnam,N.H., Shapiro,H.J., Pangilinan,J.L., Rigoutsos,I., Kyrpides,N.C., Blackall,L.L., McMahon,K.D., Hugenholtz,P.
Submission:
Submitted (13-SEP-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 26 authorshide authors
Copeland,A., Lucas,S., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Martin,H.G., Ivanova,N., Kunin,V., Warnecke,F., McHardy,A.C., Yeates,C., He,S., Salamov,A., Szeto,E., Putnam,N., Shapiro,H.J., Pangilinan,J.L., Rigoutsos,I., Kyrpides,N.C., Blackall,L.L., McMahon,K.D., Hugenholtz,P., US DOE Joint Genome Institute

The bioreactor sludge metagenome whole genome shotgun (WGS) project has the project accession AATO00000000. This version of the project (01) has the accession number AATO01000000, and consists of sequences AATO01000001-AATO01015866.

URL -- http://www.jgi.doe.gov JGI Project ID: 3635729 Source DNA available from Philip Hugenholtz (PHugenholtz@lbl.gov) Contacts: Philip Hugenholtz (PHugenholtz@lbl.gov) Fully annotated version of this assembly can be found in http://img.jgi.doe.gov/m under 'microbiomes' and the 'sludge/US phrap assembly' heading. Whole genome sequencing and draft assembly at JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).

Contigs
Download
GenBank:AATO01.1.gbff.gz 11.2 Mb
FASTA:AATO01.1.fsa_nt.gz 7.7 Mb
ASN.1:AATO01.1.bbs.gz 6.5 Mb