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Sequence Set Browser

 

AASZ00000000.1 symbiont metagenome

Master
# of Contigs: 5,597
# of Proteins: 0
# of Scaffolds/Chrs: 1,117
Total length: 23,736,175 bp
BioProject: PRJNA17779
BioSample: SAMN02954240
Keywords: WGS
Organism: symbiont metagenomeshow lineagehide lineage
Biosource:
/environmental_sample
/host = Olavius algarvensis; Olavius ilvae
/isolation_source = gutless worms collected in the Mediterranean Sea, off the coast of Capo di Sant Andrea, Elba, Italy
/metagenomic
/mol_type = genomic
/note = collected in May 2004 and Sept. 2004
WGS: AASZ01000001:AASZ01005597
Scaffolds: DS021107:DS021197, DS021198:DS021219, DS021220:DS021445, DS021446:DS021617, DS021618:DS022223
1,117 scaffolds, total length is 36,818,270 bases
Reference:
Symbiosis insights through metagenomic analysis of a microbial consortium : Nature 443 (7114), 950-955 (2006) – show 19 authorshide authors
US DOE Joint Genome Institute (JGI-PGF), Woyke,T., Teeling,H., Ivanova,N.N., Huntemann,M., Richter,M., Gloeckner,F.O., Boffelli,D., Anderson,I.J., Barry,K.W., Shapiro,H.J., Szeto,E., Kyrpides,N.C., Mussmann,M., Amann,R., Bergin,C., Ruehland,C., Rubin,E.M., Dubilier,N.
Submission:
Submitted (25-SEP-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 26 authorshide authors
Lucas,S., Hammon,N., Glavina del Rio,T., Detter,J., Dalin,E., Tice,H., Pitluck,S., Woyke,T., Teeling,H., Ivanova,N.N., Hunteman,M., Richter,M., Gloeckner,F.O., Boffelli,D., Anderson,I.J., Barry,K.W., Shapiro,H.J., Szeto,E., Kyrpides,N.C., Mussmann,M., Amann,R., Bergin,C., Ruehland,C., Rubin,E.M., Dubilier,N., US DOE Joint Genome Institute (JGI-PGF)

The symbiont metagenome whole genome shotgun (WGS) project has the project accession AASZ00000000. This version of the project (01) has the accession number AASZ01000000, and consists of sequences AASZ01000001-AASZ01005597.

URL -- http://www.jgi.doe.gov JGI Project ID: 4000073 Source DNA available from Tanja Woyke (twoyke@lbl.gov) Contacts: Tanja Woyke (twoyke@lbl.gov) Nicole Dubilier (ndubilie@mpi-bremen.de) Fully annotated version of this assembly can be found in http://img.jgi.doe.gov/m under 'microbiomes'. Whole genome sequencing and draft assembly at JGI-PGF (http://www.genome.gov/page.cfm?pageID=10506376) The genomes of four different symbionts were assembled from the reads: DS021107-DS021197: Olavius algarvensis Gamma 1 endosymbiont DS021198-DS021219: Olavius algarvensis Gamma 3 endosymbiont DS021220-DS021445: Olavius algarvensis Delta 1 endosymbiont DS021446-DS021617: Olavius algarvensis Delta 4 endosymbiont DS021618-DS022223: unidentified.

##Genome-Assembly-Data-START##
Assembly Method : JAZZ v. 2006
Genome Coverage : not applicable
Sequencing Technology : Sanger
##Genome-Assembly-Data-END##
Contigs
Download
GenBank:AASZ01.1.gbff.gz 10.4 Mb
FASTA:AASZ01.1.fsa_nt.gz 7 Mb
ASN.1:AASZ01.1.bbs.gz 6 Mb