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Sequence Set Browser

 

AASM00000000.1 Plasmodium falciparum Dd2

Master
# of Contigs: 4,511
# of Proteins: 5,139
# of Scaffolds/Chrs: 2,837
Total length: 19,450,413 bp
BioProject: PRJNA17829
BioSample: SAMN02953660
Keywords: WGS
Annotation: Contigs, Scaffolds
Organism: Plasmodium falciparum Dd2show lineagehide lineage
Biosource:
/isolate = Dd2
/mol_type = genomic
WGS: AASM01000001:AASM01004511
Scaffolds: DS016058:DS016975, GG701595:GG703513
2,837 scaffolds, 5,139 proteins, total length is 20,875,591 bases
Reference:
The genome sequence of Plasmodium falciparum Dd2 : Unpublished – show 38 authorshide authors
Birren,B., Lander,E., Galagan,J., Nusbaum,C., Devon,K., Henn,M., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., MacCallum,I.A., Rounsley,S., Young,S., LaButti,K., Pushparaj,V., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., Luoma,S., White,J., Kodira,C., Zeng,Q., O'Leary,S., Yandava,C., Alvarado,L., Wirth,D., Volkman,S., Hartl,D., The Broad Institute Genome Sequencing Platform
Reference:
Annotation of Plasmodium falciparum Dd2 : Unpublished – show 43 authorshide authors
Volkman,S.K., Neafsey,D.E., Dash,A.P., Chitnis,C.E., Hartl,D.L., Young,S.K., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A., Borenstein,D., Chapman,S.B., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D.I., Howarth,C., Jen,D., Larson,L., Mehta,T., Neiman,D., Park,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yandava,C., Haas,B., Henn,M.R., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing Platform
Submission:
Submitted (06-SEP-2006) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – show 38 authorshide authors
Birren,B., Lander,E., Galagan,J., Nusbaum,C., Devon,K., Henn,M., Jaffe,D., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., MacCallum,I.A., Rounsley,S., Young,S., LaButti,K., Pushparaj,V., DeCaprio,D., Crawford,M., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Larson,L., Luoma,S., White,J., Kodira,C., Zeng,Q., O'Leary,S., Yandava,C., Alvarado,L., Wirth,D., Volkman,S., Hartl,D., The Broad Institute Genome Sequencing Platform

The Plasmodium falciparum Dd2 whole genome shotgun (WGS) project has the project accession AASM00000000. This version of the project (01) has the accession number AASM01000000, and consists of sequences AASM01000001-AASM01004511.

Annotation was added to the scaffolds in August 2015.

Contigs
Download
GenBank:AASM01.1.gbff.gz 7.6 Mb
FASTA:AASM01.1.fsa_nt.gz 5.2 Mb
ASN.1:AASM01.1.bbs.gz 8 Mb