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Sequence Set Browser


AAQX00000000.1 Phytophthora ramorum

# of Contigs: 7,589
# of Proteins: 0
# of Scaffolds/Chrs: 2,576
Total length: 54,424,978 bp
BioProject: PRJNA12571
BioSample: SAMN02953655
Keywords: WGS
Organism: Phytophthora ramorumshow lineagehide lineage
/mol_type = genomic
/strain = Pr102
WGS: AAQX01000001:AAQX01007589
Scaffolds: DS565998:DS568573
2,576 scaffolds, total length is 66,652,401 bases
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis : Science 313 (5791), 1261-1266 (2006) – show 54 authorshide authors
US DOE Joint Genome Institute (JGI-PGF), Tyler,B.M., Tripathy,S., Zhang,X., Dehal,P., Jiang,R.H., Aerts,A., Arredondo,F.D., Baxter,L., Bensasson,D., Beynon,J.L., Chapman,J., Damasceno,C.M., Dorrance,A.E., Dou,D., Dickerman,A.W., Dubchak,I.L., Garbelotto,M., Gijzen,M., Gordon,S.G., Govers,F., Grunwald,N.J., Huang,W., Ivors,K.L., Jones,R.W., Kamoun,S., Krampis,K., Lamour,K.H., Lee,M.K., McDonald,W.H., Medina,M., Meijer,H.J., Nordberg,E.K., Maclean,D.J., Ospina-Giraldo,M.D., Morris,P.F., Phuntumart,V., Putnam,N.H., Rash,S., Rose,J.K., Sakihama,Y., Salamov,A.A., Savidor,A., Scheuring,C.F., Smith,B.M., Sobral,B.W., Terry,A., Torto-Alalibo,T.A., Win,J., Xu,Z., Zhang,H., Grigoriev,I.V., Rokhsar,D.S., Boore,J.L.
Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA – show 17 authorshide authors
Lucas,S., Hammon,N., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Tyler,B.M., Tripathy,S., Dehal,P., Chapman,J., Putnam,N.H., Salamov,A.A., Terry,A., Grigoriev,I.V., Rokhsar,D.S., Boore,J.L., US DOE Joint Genome Institute (JGI-PGF)

The Phytophthora ramorum whole genome shotgun (WGS) project has the project accession AAQX00000000. This version of the project (01) has the accession number AAQX01000000, and consists of sequences AAQX01000001-AAQX01007589.

URL -- JGI Project ID: 3436098 Source DNA available from Matteo Garbelotto ( Contacts: Brett M. Tyler ( Jeffrey Boore ( The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (

GenBank:AAQX01.1.gbff.gz 23.6 Mb
FASTA:AAQX01.1.fsa_nt.gz 16.1 Mb
ASN.1:AAQX01.1.bbs.gz 13.2 Mb