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Sequence Set Browser

 

AAPP00000000.1 Drosophila ananassae

Master
# of Contigs: 20,550
# of Proteins: 21,191
# of Scaffolds/Chrs: 13,749
Total length: 213,918,817 bp
BioProject: PRJNA12651
BioSample: SAMN02953648
Keywords: WGS
Annotation: Contigs, Scaffolds
Organism: Drosophila ananassaeshow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = TSC#14024-0371.13
WGS: AAPP01000001:AAPP01020550
Scaffolds: CH902617:CH916365
13,749 scaffolds, 21,191 proteins, total length is 230,993,012 bases
Reference:
Evolution of genes and genomes on the Drosophila phylogeny : Nature 450 (7167), 203-218 (2007) – show 418 authorshide authors
Drosophila 12 Genomes Consortium, Clark,A.G., Eisen,M.B., Smith,D.R., Bergman,C.M., Oliver,B., Markow,T.A., Kaufman,T.C., Kellis,M., Gelbart,W., Iyer,V.N., Pollard,D.A., Sackton,T.B., Larracuente,A.M., Singh,N.D., Abad,J.P., Abt,D.N., Adryan,B., Aguade,M., Akashi,H., Anderson,W.W., Aquadro,C.F., Ardell,D.H., Arguello,R., Artieri,C.G., Barbash,D.A., Barker,D., Barsanti,P., Batterham,P., Batzoglou,S., Begun,D., Bhutkar,A., Blanco,E., Bosak,S.A., Bradley,R.K., Brand,A.D., Brent,M.R., Brooks,A.N., Brown,R.H., Butlin,R.K., Caggese,C., Calvi,B.R., Bernardo de Carvalho,A., Caspi,A., Castrezana,S., Celniker,S.E., Chang,J.L., Chapple,C., Chatterji,S., Chinwalla,A., Civetta,A., Clifton,S.W., Comeron,J.M., Costello,J.C., Coyne,J.A., Daub,J., David,R.G., Delcher,A.L., Delehaunty,K., Do,C.B., Ebling,H., Edwards,K., Eickbush,T., Evans,J.D., Filipski,A., Findeiss,S., Freyhult,E., Fulton,L., Fulton,R., Garcia,A.C., Gardiner,A., Garfield,D.A., Garvin,B.E., Gibson,G., Gilbert,D., Gnerre,S., Godfrey,J., Good,R., Gotea,V., Gravely,B., Greenberg,A.J., Griffiths-Jones,S., Gross,S., Guigo,R., Gustafson,E.A., Haerty,W., Hahn,M.W., Halligan,D.L., Halpern,A.L., Halter,G.M., Han,M.V., Heger,A., Hillier,L., Hinrichs,A.S., Holmes,I., Hoskins,R.A., Hubisz,M.J., Hultmark,D., Huntley,M.A., Jaffe,D.B., Jagadeeshan,S., Jeck,W.R., Johnson,J., Jones,C.D., Jordan,W.C., Karpen,G.H., Kataoka,E., Keightley,P.D., Kheradpour,P., Kirkness,E.F., Koerich,L.B., Kristiansen,K., Kudrna,D., Kulathinal,R.J., Kumar,S., Kwok,R., Lander,E., Langley,C.H., Lapoint,R., Lazzaro,B.P., Lee,S.J., Levesque,L., Li,R., Lin,C.F., Lin,M.F., Lindblad-Toh,K., Llopart,A., Long,M., Low,L., Lozovsky,E., Lu,J., Luo,M., Machado,C.A., Makalowski,W., Marzo,M., Matsuda,M., Matzkin,L., McAllister,B., McBride,C.S., McKernan,B., McKernan,K., Mendez-Lago,M., Minx,P., Mollenhauer,M.U., Montooth,K., Mount,S.M., Mu,X., Myers,E., Negre,B., Newfeld,S., Nielsen,R., Noor,M.A., O'Grady,P., Pachter,L., Papaceit,M., Parisi,M.J., Parisi,M., Parts,L., Pedersen,J.S., Pesole,G., Phillippy,A.M., Ponting,C.P., Pop,M., Porcelli,D., Powell,J.R., Prohaska,S., Pruitt,K., Puig,M., Quesneville,H., Ram,K.R., Rand,D., Rasmussen,M.D., Reed,L.K., Reenan,R., Reily,A., Remington,K.A., Rieger,T.T., Ritchie,M.G., Robin,C., Rogers,Y.H., Rohde,C., Rozas,J., Rubenfield,M.J., Ruiz,A., Russo,S., Salzberg,S.L., Sanchez-Gracia,A., Saranga,D.J., Sato,H., Schaeffer,S.W., Schatz,M.C., Schlenke,T., Schwartz,R., Segarra,C., Singh,R.S., Sirot,L., Sirota,M., Sisneros,N.B., Smith,C.D., Smith,T.F., Spieth,J., Stage,D.E., Stark,A., Stephan,W., Strausberg,R.L., Strempel,S., Sturgill,D., Sutton,G., Sutton,G.G., Tao,W., Teichmann,S., Tobari,Y.N., Tomimura,Y., Tsolas,J.M., Valente,V.L., Venter,E., Venter,J.C., Vicario,S., Vieira,F.G., Vilella,A.J., Villasante,A., Walenz,B., Wang,J., Wasserman,M., Watts,T., Wilson,D., Wilson,R.K., Wing,R.A., Wolfner,M.F., Wong,A., Wong,G.K., Wu,C.I., Wu,G., Yamamoto,D., Yang,H.P., Yang,S.P., Yorke,J.A., Yoshida,K., Zdobnov,E., Zhang,P., Zhang,Y., Zimin,A.V., Baldwin,J., Abdouelleil,A., Abdulkadir,J., Abebe,A., Abera,B., Abreu,J., Acer,S.C., Aftuck,L., Alexander,A., An,P., Anderson,E., Anderson,S., Arachi,H., Azer,M., Bachantsang,P., Barry,A., Bayul,T., Berlin,A., Bessette,D., Bloom,T., Blye,J., Boguslavskiy,L., Bonnet,C., Boukhgalter,B., Bourzgui,I., Brown,A., Cahill,P., Channer,S., Cheshatsang,Y., Chuda,L., Citroen,M., Collymore,A., Cooke,P., Costello,M., D'Aco,K., Daza,R., De Haan,G., DeGray,S., DeMaso,C., Dhargay,N., Dooley,K., Dooley,E., Doricent,M., Dorje,P., Dorjee,K., Dupes,A., Elong,R., Falk,J., Farina,A., Faro,S., Ferguson,D., Fisher,S., Foley,C.D., Franke,A., Friedrich,D., Gadbois,L., Gearin,G., Gearin,C.R., Giannoukos,G., Goode,T., Graham,J., Grandbois,E., Grewal,S., Gyaltsen,K., Hafez,N., Hagos,B., Hall,J., Henson,C., Hollinger,A., Honan,T., Huard,M.D., Hughes,L., Hurhula,B., Husby,M.E., Kamat,A., Kanga,B., Kashin,S., Khazanovich,D., Kisner,P., Lance,K., Lara,M., Lee,W., Lennon,N., Letendre,F., LeVine,R., Lipovsky,A., Liu,X., Liu,J., Liu,S., Lokyitsang,T., Lokyitsang,Y., Lubonja,R., Lui,A., MacDonald,P., Magnisalis,V., Maru,K., Matthews,C., McCusker,W., McDonough,S., Mehta,T., Meldrim,J., Meneus,L., Mihai,O., Mihalev,A., Mihova,T., Mittelman,R., Mlenga,V., Montmayeur,A., Mulrain,L., Navidi,A., Naylor,J., Negash,T., Nguyen,T., Nguyen,N., Nicol,R., Norbu,C., Norbu,N., Novod,N., O'Neill,B., Osman,S., Markiewicz,E., Oyono,O.L., Patti,C., Phunkhang,P., Pierre,F., Priest,M., Raghuraman,S., Rege,F., Reyes,R., Rise,C., Rogov,P., Ross,K., Ryan,E., Settipalli,S., Shea,T., Sherpa,N., Shi,L., Shih,D., Sparrow,T., Spaulding,J., Stalker,J., Stange-Thomann,N., Stavropoulos,S., Stone,C., Strader,C., Tesfaye,S., Thomson,T., Thoulutsang,Y., Thoulutsang,D., Topham,K., Topping,I., Tsamla,T., Vassiliev,H., Vo,A., Wangchuk,T., Wangdi,T., Weiand,M., Wilkinson,J., Wilson,A., Yadav,S., Young,G., Yu,Q., Zembek,L., Zhong,D., Zimmer,A., Zwirko,Z., Jaffe,D.B., Alvarez,P., Brockman,W., Butler,J., Chin,C., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., MacCallum,I.
Reference:
Assembly reconciliation : Bioinformatics 24 (1), 42-45 (2008) – Zimin,A.V., Smith,D.R., Sutton,G., Yorke,J.A.
Submission:
Submitted (03-APR-2006) Agencourt Bioscience Corporation, 500 Cummings Center Suite 2450, Beverly, MA 01915, USA – show 19 authorshide authors
Smith,D.R., Tao,W., Saranga,D.J., Brand,A., Ebling,H., Rubenfield,M., Bosak,S., Garvin,B., McKernan,B., McKernan,K., Parisi,M., Stelling,O., Lin,N., David,R., Gustafson,E., Zimin,A., Roberts,M., York,J., Sutton,G.
Submission:
Submitted (16-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA – FlyBase

The Drosophila ananassae whole genome shotgun (WGS) project has the project accession AAPP00000000. This version of the project (01) has the accession number AAPP01000000, and consists of sequences AAPP01000001-AAPP01020550.

This is the CAF1 assembly of the Drosophila ananassae genome. It has 8.9x coverage. Annotation was updated in October 2015.

##Genome-Annotation-Data-START##
Annotation Provider : FlyBase
Annotation Status : Full annotation
Annotation Version : Release 1.04
Annotation Pipeline : NCBI eukaryotic genome annotation pipeline
URL : http://flybase.org
##Genome-Annotation-Data-END##
Contigs
Download
GenBank:AAPP01.1.gbff.gz 82.6 Mb
 AAPP01.2.gbff.gz 12.6 Mb
FASTA:AAPP01.1.fsa_nt.gz 51.3 Mb
 AAPP01.2.fsa_nt.gz 8.1 Mb
ASN.1:AAPP01.1.bbs.gz 50.6 Mb
 AAPP01.2.bbs.gz 7.2 Mb