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Sequence Set Browser

 

AANI00000000.1 Drosophila virilis

Master
# of Contigs: 18,402
# of Proteins: 20,548
# of Scaffolds/Chrs: 13,530
Total length: 189,205,863 bp
BioProject: PRJNA12688
BioSample: SAMN02953641
Keywords: WGS
Annotation: Contigs, Scaffolds
Organism: Drosophila virilisshow lineagehide lineage
Biosource:
/mol_type = genomic
/strain = TSC#15010-1051.87
WGS: AANI01000001:AANI01018402
Scaffolds: CH940647:CH954176
13,530 scaffolds, 20,548 proteins, total length is 206,026,697 bases
Reference:
Evolution of genes and genomes on the Drosophila phylogeny : Nature 450 (7167), 203-218 (2007) – show 418 authorshide authors
Drosophila 12 Genomes Consortium, Clark,A.G., Eisen,M.B., Smith,D.R., Bergman,C.M., Oliver,B., Markow,T.A., Kaufman,T.C., Kellis,M., Gelbart,W., Iyer,V.N., Pollard,D.A., Sackton,T.B., Larracuente,A.M., Singh,N.D., Abad,J.P., Abt,D.N., Adryan,B., Aguade,M., Akashi,H., Anderson,W.W., Aquadro,C.F., Ardell,D.H., Arguello,R., Artieri,C.G., Barbash,D.A., Barker,D., Barsanti,P., Batterham,P., Batzoglou,S., Begun,D., Bhutkar,A., Blanco,E., Bosak,S.A., Bradley,R.K., Brand,A.D., Brent,M.R., Brooks,A.N., Brown,R.H., Butlin,R.K., Caggese,C., Calvi,B.R., Bernardo de Carvalho,A., Caspi,A., Castrezana,S., Celniker,S.E., Chang,J.L., Chapple,C., Chatterji,S., Chinwalla,A., Civetta,A., Clifton,S.W., Comeron,J.M., Costello,J.C., Coyne,J.A., Daub,J., David,R.G., Delcher,A.L., Delehaunty,K., Do,C.B., Ebling,H., Edwards,K., Eickbush,T., Evans,J.D., Filipski,A., Findeiss,S., Freyhult,E., Fulton,L., Fulton,R., Garcia,A.C., Gardiner,A., Garfield,D.A., Garvin,B.E., Gibson,G., Gilbert,D., Gnerre,S., Godfrey,J., Good,R., Gotea,V., Gravely,B., Greenberg,A.J., Griffiths-Jones,S., Gross,S., Guigo,R., Gustafson,E.A., Haerty,W., Hahn,M.W., Halligan,D.L., Halpern,A.L., Halter,G.M., Han,M.V., Heger,A., Hillier,L., Hinrichs,A.S., Holmes,I., Hoskins,R.A., Hubisz,M.J., Hultmark,D., Huntley,M.A., Jaffe,D.B., Jagadeeshan,S., Jeck,W.R., Johnson,J., Jones,C.D., Jordan,W.C., Karpen,G.H., Kataoka,E., Keightley,P.D., Kheradpour,P., Kirkness,E.F., Koerich,L.B., Kristiansen,K., Kudrna,D., Kulathinal,R.J., Kumar,S., Kwok,R., Lander,E., Langley,C.H., Lapoint,R., Lazzaro,B.P., Lee,S.J., Levesque,L., Li,R., Lin,C.F., Lin,M.F., Lindblad-Toh,K., Llopart,A., Long,M., Low,L., Lozovsky,E., Lu,J., Luo,M., Machado,C.A., Makalowski,W., Marzo,M., Matsuda,M., Matzkin,L., McAllister,B., McBride,C.S., McKernan,B., McKernan,K., Mendez-Lago,M., Minx,P., Mollenhauer,M.U., Montooth,K., Mount,S.M., Mu,X., Myers,E., Negre,B., Newfeld,S., Nielsen,R., Noor,M.A., O'Grady,P., Pachter,L., Papaceit,M., Parisi,M.J., Parisi,M., Parts,L., Pedersen,J.S., Pesole,G., Phillippy,A.M., Ponting,C.P., Pop,M., Porcelli,D., Powell,J.R., Prohaska,S., Pruitt,K., Puig,M., Quesneville,H., Ram,K.R., Rand,D., Rasmussen,M.D., Reed,L.K., Reenan,R., Reily,A., Remington,K.A., Rieger,T.T., Ritchie,M.G., Robin,C., Rogers,Y.H., Rohde,C., Rozas,J., Rubenfield,M.J., Ruiz,A., Russo,S., Salzberg,S.L., Sanchez-Gracia,A., Saranga,D.J., Sato,H., Schaeffer,S.W., Schatz,M.C., Schlenke,T., Schwartz,R., Segarra,C., Singh,R.S., Sirot,L., Sirota,M., Sisneros,N.B., Smith,C.D., Smith,T.F., Spieth,J., Stage,D.E., Stark,A., Stephan,W., Strausberg,R.L., Strempel,S., Sturgill,D., Sutton,G., Sutton,G.G., Tao,W., Teichmann,S., Tobari,Y.N., Tomimura,Y., Tsolas,J.M., Valente,V.L., Venter,E., Venter,J.C., Vicario,S., Vieira,F.G., Vilella,A.J., Villasante,A., Walenz,B., Wang,J., Wasserman,M., Watts,T., Wilson,D., Wilson,R.K., Wing,R.A., Wolfner,M.F., Wong,A., Wong,G.K., Wu,C.I., Wu,G., Yamamoto,D., Yang,H.P., Yang,S.P., Yorke,J.A., Yoshida,K., Zdobnov,E., Zhang,P., Zhang,Y., Zimin,A.V., Baldwin,J., Abdouelleil,A., Abdulkadir,J., Abebe,A., Abera,B., Abreu,J., Acer,S.C., Aftuck,L., Alexander,A., An,P., Anderson,E., Anderson,S., Arachi,H., Azer,M., Bachantsang,P., Barry,A., Bayul,T., Berlin,A., Bessette,D., Bloom,T., Blye,J., Boguslavskiy,L., Bonnet,C., Boukhgalter,B., Bourzgui,I., Brown,A., Cahill,P., Channer,S., Cheshatsang,Y., Chuda,L., Citroen,M., Collymore,A., Cooke,P., Costello,M., D'Aco,K., Daza,R., De Haan,G., DeGray,S., DeMaso,C., Dhargay,N., Dooley,K., Dooley,E., Doricent,M., Dorje,P., Dorjee,K., Dupes,A., Elong,R., Falk,J., Farina,A., Faro,S., Ferguson,D., Fisher,S., Foley,C.D., Franke,A., Friedrich,D., Gadbois,L., Gearin,G., Gearin,C.R., Giannoukos,G., Goode,T., Graham,J., Grandbois,E., Grewal,S., Gyaltsen,K., Hafez,N., Hagos,B., Hall,J., Henson,C., Hollinger,A., Honan,T., Huard,M.D., Hughes,L., Hurhula,B., Husby,M.E., Kamat,A., Kanga,B., Kashin,S., Khazanovich,D., Kisner,P., Lance,K., Lara,M., Lee,W., Lennon,N., Letendre,F., LeVine,R., Lipovsky,A., Liu,X., Liu,J., Liu,S., Lokyitsang,T., Lokyitsang,Y., Lubonja,R., Lui,A., MacDonald,P., Magnisalis,V., Maru,K., Matthews,C., McCusker,W., McDonough,S., Mehta,T., Meldrim,J., Meneus,L., Mihai,O., Mihalev,A., Mihova,T., Mittelman,R., Mlenga,V., Montmayeur,A., Mulrain,L., Navidi,A., Naylor,J., Negash,T., Nguyen,T., Nguyen,N., Nicol,R., Norbu,C., Norbu,N., Novod,N., O'Neill,B., Osman,S., Markiewicz,E., Oyono,O.L., Patti,C., Phunkhang,P., Pierre,F., Priest,M., Raghuraman,S., Rege,F., Reyes,R., Rise,C., Rogov,P., Ross,K., Ryan,E., Settipalli,S., Shea,T., Sherpa,N., Shi,L., Shih,D., Sparrow,T., Spaulding,J., Stalker,J., Stange-Thomann,N., Stavropoulos,S., Stone,C., Strader,C., Tesfaye,S., Thomson,T., Thoulutsang,Y., Thoulutsang,D., Topham,K., Topping,I., Tsamla,T., Vassiliev,H., Vo,A., Wangchuk,T., Wangdi,T., Weiand,M., Wilkinson,J., Wilson,A., Yadav,S., Young,G., Yu,Q., Zembek,L., Zhong,D., Zimmer,A., Zwirko,Z., Jaffe,D.B., Alvarez,P., Brockman,W., Butler,J., Chin,C., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., MacCallum,I.
Reference:
Assembly reconciliation : Bioinformatics 24 (1), 42-45 (2008) – Zimin,A.V., Smith,D.R., Sutton,G., Yorke,J.A.
Submission:
Submitted (06-JAN-2006) Agencourt Bioscience Corporation, 500 Cummings Center Suite 2450, Beverly, MA 01915, USA – show 19 authorshide authors
Smith,D.R., Tao,W., Saranga,D.J., Brand,A., Ebling,H., Rubenfield,M., Bosak,S., Garvin,B., McKernan,B., McKernan,K., Parisi,M., Stelling,O., Lin,N., David,R., Gustafson,E., Zimin,A., Roberts,M., York,J., Sutton,G.
Submission:
Submitted (02-NOV-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA – FlyBase

The Drosophila virilis whole genome shotgun (WGS) project has the project accession AANI00000000. This version of the project (01) has the accession number AANI01000000, and consists of sequences AANI01000001-AANI01018402.

This is the CAF1 assembly of the Drosophila virilis genome. It has 8.0x coverage. Annotation was updated in November 2015.

##Genome-Annotation-Data-START##
Annotation Provider : FlyBase
Annotation Status : Full annotation
Annotation Version : Release 1.03
Annotation Pipeline : NCBI eukaryotic genome annotation pipeline
URL : http://flybase.org
##Genome-Annotation-Data-END##
Contigs
Download
GenBank:AANI01.1.gbff.gz 81.2 Mb
 AANI01.2.gbff.gz 1.3 Mb
FASTA:AANI01.1.fsa_nt.gz 50.8 Mb
 AANI01.2.fsa_nt.gz 780.6 kb
ASN.1:AANI01.1.bbs.gz 50.3 Mb
 AANI01.2.bbs.gz 816.2 kb