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Sequence Set Browser

 

AAMB00000000.2 Burkholderia pseudomallei 1106b

Master
# of Contigs: 113
# of Proteins: 7,192
# of Scaffolds: 84
Total length: 7,213,434 bp
BioProject: PRJNA16181
BioSample: SAMN02435836
Keywords: WGS
Annotation: Scaffolds
Organism: Burkholderia pseudomallei 1106bshow lineagehide lineage
Biosource:
/collection_date = 1996
/country = Thailand: Bangkok
/host = Homo sapiens
/isolation_source = pus aspirated from liver abscess
/mol_type = genomic genomic
/strain = 1106b
WGS: AAMB02000001:AAMB02000113
Scaffolds: CM000774:CM000775, GG693301:GG693382
84 scaffolds, 7,192 proteins, total length is 7,216,534 bases
Submission:
Submitted (15-NOV-2005) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – Nierman,W.C.
Submission:
Submitted (14-AUG-2007) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – Nierman,W.C.
Submission:
Submitted (20-MAY-2009) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA – show 9 authorshide authors
Harkins,D.M., DeShazer,D., Woods,D.E., Brinkac,L.M., Brown,K.A., Hung,G.C., Tuanyok,A., Zhang,B., Nierman,W.C.

On Aug 15, 2007 this sequence version replaced gi:90309306.

The Burkholderia pseudomallei 1106b whole genome shotgun (WGS) project has the project accession AAMB00000000. This version of the project (02) has the accession number AAMB02000000, and consists of sequences AAMB02000001-AAMB02000113.

Isolated in 1996 from pus aspirated from liver abscess from patient at the Wellcome Trust Unit, Bangkok, Thailand. The patient survived to discharge. This strain will be used for comparative genomics. The annotation submitted here is the result of two distinct annotation efforts. DeShazer, D., Woods, D.E. and Nierman, W.C. generated the initial functional annotation. Participating institutions for the initial annotation were: U.S. Army Medical Research Institute of Infectious Diseases, University of Calgary and the J. Craig Venter Institute. The annotation was subsequently modified by Harkins, D.M., Brinkac, L.M., Brown, K.A., Hung, G.C., Tuanyok, A., Zhang, B. and Nierman, W.C. at the Pathema-Burkholderia annotation jamboree held at the J. Craig Venter Institute, September 24-26, 2008 (http://pathema.jcvi.org). Participating institutions for the genome revision were: The J. Craig Venter Institute, University of Texas at Austin, Imperial College London, Armed Forces Institute of Pathology, and Northern Arizona University. DNA is available from William Nierman (wnierman@jcvi.org) of the J. Craig Venter Institute. Genome Coverage: 8.5x Sequencing Technology: ABI Annotated scaffolds were added in June 2009.

Contigs
Download
GenBank:AAMB02.1.gbff.gz 2.8 Mb
FASTA:AAMB02.1.fsa_nt.gz 2 Mb
ASN.1:AAMB02.1.bbs.gz 1.6 Mb