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Sequence Set Browser


AAHX00000000.1 Rattus norvegicus

# of Contigs: 503,452
# of Proteins: 44,059
# of Scaffolds/Chrs: 4,123
Total length: 2,807,682,847 bp
BioProject: PRJNA13999
BioSample: SAMN03000701
Keywords: WGS
Annotation: Scaffolds
Organism: Rattus norvegicusshow lineagehide lineage
/mol_type = genomic genomic
/strain = BN; Sprague-Dawley
WGS: AAHX01000001:AAHX01503452
Scaffolds: CH473947:CH474177, CH474178:CH475226, CM000231:CM000251, DS030439:DS030458, DS030459:DS033260
4,123 scaffolds, 44,059 proteins, total length is 5,123,789,776 bases
Submitted (08-JUN-2005) Celera, 45 W Gude Drive, Rockville, MD 20850, USA – show 28 authorshide authors
Mural,R.J., Li,P.W., Adams,M.D., Amanatides,P.G., Baden-Tillson,H., Barnstead,M., Chin,S.H., Dew,I., Evans,C.A., Ferriera,S., Flanigan,M., Fosler,C., Glodek,A., Gu,Z., Holt,R.A., Jennings,D., Kraft,C.L., Lu,F., Nguyen,T., Nusskern,D.R., Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Wang,Z., Woodage,T., Zheng,X.H., Zhong,F.

The Rattus norvegicus whole genome shotgun (WGS) project has the project accession AAHX00000000. This version of the project (01) has the accession number AAHX01000000, and consists of sequences AAHX01000001-AAHX01503452.

This is the January 2003 combined whole genome shotgun assembly of Rattus norvegicus. It contains 29 million Brown Norway fragments sequenced by Celera and external sources and nearly eight million Celera-proprietary Sprague-Dawley sequence fragments. The assembly process relied on Celera's paired reads and BAC end reads from TIGR for long range order and orientation. Its scaffolds were mapped to chromosomes using STS maps. For more detailed information about whole genome sequencing and Celera's assembly process, please refer to Venter, J.C. et al. Science 2001. 291:1304-1351. Annotation was added to the scaffolds in June 2007.

GenBank:AAHX01.1.gbff.gz 210.6 Mb
 AAHX01.2.gbff.gz 210.6 Mb
 AAHX01.3.gbff.gz 210.7 Mb
 AAHX01.4.gbff.gz 210.6 Mb
 AAHX01.5.gbff.gz 209.7 Mb
 AAHX01.6.gbff.gz 105.8 Mb
 AAHX01.7.gbff.gz 40 Mb
ASN.1:AAHX01.1.bbs.gz 114.3 Mb
 AAHX01.2.bbs.gz 114.5 Mb
 AAHX01.3.bbs.gz 114.7 Mb
 AAHX01.4.bbs.gz 114.5 Mb
 AAHX01.5.bbs.gz 113.8 Mb
 AAHX01.6.bbs.gz 58 Mb
 AAHX01.7.bbs.gz 21.8 Mb